Pedobacter suwonensis strain DSM 18130

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter suwonensis strain DSM 18130 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and possesses flagella, although it does not utilize them for locomotion. It thrives optimally at a temperature of 32°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. A notable genetic feature of Pedobacter suwonensis DSM 18130 is the presence of a single replicon, which suggests a streamlined genetic architecture. This bacterium is non-spore-forming, which may have implications for its survival strategies in varying environmental conditions. The strain is cataloged under the accession number FOJM00000000.1, which provides a reference for genomic studies and phylogenetic analysis. Given its aerobic nature, Pedobacter suwonensis DSM 18130 likely plays a role in the decomposition of organic matter in oxygen-rich environments, contributing to nutrient cycling. The characteristics of this bacterium suggest its potential ecological significance in microbial communities, particularly in soils or aquatic systems where aerobic conditions prevail. Its non-motile nature may influence its ecological interactions and niche occupation, emphasizing the importance of studying such bacteria to understand their roles in ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter suwonensis
Strainstrain DSM 18130

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter suwonensis strain DSM 18130
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter suwonensis strain DSM 18130 genome assembly, contig:

Gene Summary

Adenine Count

1755941 bp

Thymine Count

1751697 bp

Guanine Count

1139050 bp

Cytosine Count

1154468 bp

Genome Length

5803831 bp

Protein-coding Genes

4873 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleotide-binding universal stress protein, uspa familySAMN04488511_10553Not AvailableNegative1879784 - 188023616250.4
sh3 domain-containing proteinSAMN04488511_10554Not AvailablePositive1880344 - 188112929657.1
carboxypepd_reg-like domain-containing proteinSAMN04488511_10555Not AvailablePositive1881170 - 188189227379.1
wd domain-containing protein, g-beta repeat-containing proteinSAMN04488511_10556Not AvailableNegative1881899 - 188279534157.9
phosphoribosyl-atp pyrophosphatase /phosphoribosyl-amp cyclohydrolaseSAMN04488511_10557Not AvailableNegative1882877 - 188347922714.2
cyclaseSAMN04488511_10558Not AvailableNegative1883541 - 188473743923.9
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseSAMN04488511_10559Not AvailableNegative1884780 - 188552928028.0
glutamine amidotransferaseSAMN04488511_10560Not AvailableNegative1885531 - 188612421620.1
imidazoleglycerol-phosphate dehydrataseSAMN04488511_10561Not AvailableNegative1886307 - 188744042707.1
histidinol-phosphate aminotransferaseSAMN04488511_10562Not AvailableNegative1887442 - 188848238829.4

Displaying genes 1551 – 1560 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.