Pedobacter suwonensis strain DSM 18130

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter suwonensis strain DSM 18130 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and possesses flagella, although it does not utilize them for locomotion. It thrives optimally at a temperature of 32°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. A notable genetic feature of Pedobacter suwonensis DSM 18130 is the presence of a single replicon, which suggests a streamlined genetic architecture. This bacterium is non-spore-forming, which may have implications for its survival strategies in varying environmental conditions. The strain is cataloged under the accession number FOJM00000000.1, which provides a reference for genomic studies and phylogenetic analysis. Given its aerobic nature, Pedobacter suwonensis DSM 18130 likely plays a role in the decomposition of organic matter in oxygen-rich environments, contributing to nutrient cycling. The characteristics of this bacterium suggest its potential ecological significance in microbial communities, particularly in soils or aquatic systems where aerobic conditions prevail. Its non-motile nature may influence its ecological interactions and niche occupation, emphasizing the importance of studying such bacteria to understand their roles in ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter suwonensis
Strainstrain DSM 18130

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter suwonensis strain DSM 18130
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter suwonensis strain DSM 18130 genome assembly, contig:

Gene Summary

Adenine Count

1755941 bp

Thymine Count

1751697 bp

Guanine Count

1139050 bp

Cytosine Count

1154468 bp

Genome Length

5803831 bp

Protein-coding Genes

4873 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN04488511_10522Not AvailableNegative1851166 - 185178622763.1
heme exporter protein bSAMN04488511_10523Not AvailablePositive1852262 - 185292724682.0
heme exporter protein cSAMN04488511_10524Not AvailablePositive1853009 - 185367125445.5
ccmd family proteinSAMN04488511_10525Not AvailablePositive1853715 - 18538946722.4
glutamate dehydrogenase (nad(p)+)SAMN04488511_10526Not AvailablePositive1854325 - 185574651885.2
sodium/proton antiporter, cpa1 familySAMN04488511_10527Not AvailableNegative1855889 - 185749359375.4
hypothetical proteinSAMN04488511_10528Not AvailableNegative1857600 - 185899452960.3
hypothetical proteinSAMN04488511_10529Not AvailableNegative1859085 - 186111876553.8
hypothetical proteinSAMN04488511_10530Not AvailableNegative1861179 - 186185924932.1
cytochrome c-type biogenesis protein ccmeSAMN04488511_10531Not AvailablePositive1862057 - 186254818409.3

Displaying genes 1521 – 1530 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.