Pedobacter suwonensis strain DSM 18130

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter suwonensis strain DSM 18130 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 32.0°C. This strain does not form spores, which may reflect its ecological adaptations to specific environments where sporulation is not a primary survival strategy. The rod shape of Pedobacter suwonensis is characteristic of many members of the genus Pedobacter, which are typically found in various environments, including soil and water. The Gram-negative nature of this strain indicates a complex cell envelope structure, featuring an outer membrane that may contribute to its resilience in diverse habitats. Given its aerobic requirement, Pedobacter suwonensis likely plays a role in the microbial communities of oxygen-rich environments, potentially participating in biogeochemical cycles, such as the degradation of organic matter. The optimal growth temperature suggests that this strain is well adapted to moderate temperature habitats, which could include temperate soils or freshwater systems. Further investigation into the metabolic capabilities and ecological interactions of Pedobacter suwonensis could provide insights into its role in nutrient cycling and its contributions to ecosystem functioning in the environments it inhabits.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter suwonensis
Strainstrain DSM 18130

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter suwonensis strain DSM 18130


Gene Summary

Adenine Count

1755941 bp

Thymine Count

1751697 bp

Guanine Count

1139050 bp

Cytosine Count

1154468 bp

Genome Length

5803831 bp

Protein-coding Genes

4873 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Decorating proteinSAMN04488511_1151Not Available-4309297 - 431216994836.4
Minor tail proteinSAMN04488511_1152Not Available-4312346 - 431296621199.2
Minor tail proteinSAMN04488511_1153Not Available-4313000 - 431361721462.3
Minor tail proteinSAMN04488511_1154Not Available-4313642 - 431424720769.6
Cyanobacterial phosphoribosylglycinamide formyltransferaseSAMN04488511_1155Not Available-4314254 - 431519234559.8
abc-type branched-chain amino acid transport system, substrate-binding proteinSAMN04488511_1156Not Available-4315194 - 431631841008.4
PiucSAMN04488511_1157Not Available-4316328 - 431704427097.5
CarbamoyltransferaseSAMN04488511_1158Not Available+4317171 - 431894365961.4
Hypothetical proteinSAMN04488511_1159Not Available+4318940 - 432013645244.1
phytanoyl-coa dioxygenase (phyh)SAMN04488511_11510Not Available+4320139 - 432115238776.1

Displaying genes 1 – 10 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.