Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter koreensis |
| Strain | strain Jip14 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434869 bp
Thymine Count
1436882 bp
Guanine Count
1328537 bp
Cytosine Count
1347468 bp
Genome Length
5547756 bp
Protein-coding Genes
4830 genes
Non-Coding Genes
46 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| superfamily ii dna or rna helicase, snf2 family | SAMN05421740_101538 | Not Available | Negative | 645240 - 648125 | 111920.0 |
| helix-turn-helix domain-containing protein | SAMN05421740_101539 | Not Available | Negative | 648221 - 650440 | 83168.0 |
| ferrous iron transport protein a | SAMN05421740_101540 | Not Available | Positive | 650644 - 650844 | 7178.96 |
| ferrous iron transport protein b | SAMN05421740_101541 | Not Available | Positive | 650848 - 652932 | 77267.8 |
| virus attachment protein p12 family protein | SAMN05421740_101542 | Not Available | Positive | 652936 - 653100 | 5915.34 |
| mannose-6-phosphate isomerase, type 2 | SAMN05421740_101543 | Not Available | Positive | 653157 - 653657 | 18972.2 |
| arylsulfatase a | SAMN05421740_101544 | Not Available | Negative | 653664 - 655109 | 53613.3 |
| peptide deformylase | SAMN05421740_101545 | Not Available | Negative | 655120 - 656430 | 49867.1 |
| choline dehydrogenase | SAMN05421740_101546 | Not Available | Negative | 656793 - 658508 | 64675.7 |
| gluconate 2-dehydrogenase subunit 3 | SAMN05421740_101547 | Not Available | Negative | 658542 - 659057 | 18865.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
