Parapedobacter koreensis strain Jip14

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter koreensis strain Jip14 is a Gram-negative, non-motile bacterium characterized by its rod shape and aerobic nature. This strain thrives optimally at a temperature of 37°C, classifying it as mesophilic. Notably, Parapedobacter koreensis is non-spore-forming and possesses a single replicon, which is indicative of its genomic structure. The aerobic requirement of Parapedobacter koreensis suggests it plays a role in environments where oxygen is present, potentially contributing to the degradation of organic materials or cycling of nutrients in its habitat. The optimal growth temperature of 37°C aligns with conditions found in many terrestrial environments, including soils and sediments, where microbial activity is crucial for ecological balance. This combination of traits highlights the potential ecological role of Parapedobacter koreensis strain Jip14 in its native environment, possibly facilitating processes that depend on aerobic metabolism. Understanding the characteristics of this bacterium can provide insights into its functions in biogeochemical cycles and its interactions with other microorganisms. Further research could explore its specific contributions to ecosystem dynamics, particularly in aerobic environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter koreensis
Strainstrain Jip14

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter koreensis strain Jip14 genome assembly, contig:

Gene Summary

Adenine Count

1434869 bp

Thymine Count

1436882 bp

Guanine Count

1328537 bp

Cytosine Count

1347468 bp

Genome Length

5547756 bp

Protein-coding Genes

4830 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deoxyribodipyrimidine photo-lyaseSAMN05421740_10138Not AvailableNegative36334 - 3768052536.6
apolipoprotein d and lipocalin family proteinSAMN05421740_10139Not AvailableNegative37680 - 3821920578.3
mannose-6-phosphate isomerase, cupin superfamilySAMN05421740_10140Not AvailablePositive38520 - 3906819861.5
hypothetical proteinSAMN05421740_10141Not AvailableNegative39167 - 4174095716.2
hypothetical proteinSAMN05421740_10142Not AvailablePositive41759 - 419085724.24
hypothetical proteinSAMN05421740_10143Not AvailableNegative41920 - 420515114.25
protein of unknown functionSAMN05421740_10144Not AvailableNegative42074 - 4238211243.3
rna polymerase sigma-70 factor, ecf subfamilySAMN05421740_10145Not AvailablePositive42492 - 4312124276.2
fecr family proteinSAMN05421740_10146Not AvailablePositive43187 - 4439543796.9
tonb-linked outer membrane protein, susc/raga familySAMN05421740_10147Not AvailablePositive44583 - 48071127712.0

Displaying genes 41 – 50 of 4876 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.