Parapedobacter koreensis strain Jip14

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter koreensis strain Jip14 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This strain is optimally active at a temperature of 37.0°C, suggesting its adaptation to moderate thermal environments, which may be reflective of its natural habitat. The Gram-negative nature of Parapedobacter koreensis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, characteristic of this bacterial group. This structural feature may confer various advantages, including resistance to certain antibiotics and the ability to thrive in diverse environments. The non-spore-forming characteristic implies that this strain relies on vegetative growth and may be sensitive to environmental stresses that typically trigger sporulation in other bacterial species. Given its aerobic requirement, Parapedobacter koreensis likely engages in oxidative metabolism, utilizing oxygen as a terminal electron acceptor. This trait suggests that the organism may inhabit environments rich in oxygen, possibly contributing to nutrient cycling in such ecosystems. Understanding the physiological traits of Parapedobacter koreensis strain Jip14 provides a foundation for exploring its potential roles in microbial communities, particularly in environments where aerobic conditions prevail. Further studies could elucidate its interactions with other microorganisms and its contributions to biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter koreensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter koreensis strain Jip14

Accession NumberFNZR00000000.1

Gene Summary

Adenine Count

1434869 bp

Thymine Count

1436882 bp

Guanine Count

1328537 bp

Cytosine Count

1347468 bp

Genome Length

5547756 bp

Protein-coding Genes

4830 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
rna polymerase sigma-70 factor, ecf subfamilySAMN05421740_1018Not Available-7456 - 793218172.8
cubico group peptidase, beta-lactamase class c familySAMN05421740_1019Not Available-7937 - 931050394.6
hypothetical proteinSAMN05421740_10110Not Available-9435 - 971310635.8
cell wall-associated hydrolase, nlpc familySAMN05421740_10111Not Available+10189 - 1069218163.0
hypothetical proteinSAMN05421740_10112Not Available+10925 - 111076617.21
hypothetical proteinSAMN05421740_10113Not Available+11324 - 1226532261.1
y_y_y domain-containing proteinSAMN05421740_10114Not Available+12369 - 15365115508.0
two component transcriptional regulator, lyttr familySAMN05421740_10115Not Available+15355 - 1608327885.8
hypothetical proteinSAMN05421740_10116Not Available-16107 - 163348304.19
hypothetical proteinSAMN05421740_10117Not Available+16806 - 169435221.35

Displaying genes 11 – 20 of 4876 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites