Parapedobacter koreensis strain Jip14

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter koreensis strain Jip14 is a Gram-negative, non-motile bacterium characterized by its rod shape and aerobic nature. This strain thrives optimally at a temperature of 37°C, classifying it as mesophilic. Notably, Parapedobacter koreensis is non-spore-forming and possesses a single replicon, which is indicative of its genomic structure. The aerobic requirement of Parapedobacter koreensis suggests it plays a role in environments where oxygen is present, potentially contributing to the degradation of organic materials or cycling of nutrients in its habitat. The optimal growth temperature of 37°C aligns with conditions found in many terrestrial environments, including soils and sediments, where microbial activity is crucial for ecological balance. This combination of traits highlights the potential ecological role of Parapedobacter koreensis strain Jip14 in its native environment, possibly facilitating processes that depend on aerobic metabolism. Understanding the characteristics of this bacterium can provide insights into its functions in biogeochemical cycles and its interactions with other microorganisms. Further research could explore its specific contributions to ecosystem dynamics, particularly in aerobic environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter koreensis
Strainstrain Jip14

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter koreensis strain Jip14 genome assembly, contig:

Gene Summary

Adenine Count

1434869 bp

Thymine Count

1436882 bp

Guanine Count

1328537 bp

Cytosine Count

1347468 bp

Genome Length

5547756 bp

Protein-coding Genes

4830 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma-70 factor, ecf subfamilySAMN05421740_10188Not AvailablePositive102999 - 10358922212.0
hypothetical proteinSAMN05421740_10189Not AvailablePositive103610 - 10479443341.0
outer membrane cobalamin receptor proteinSAMN05421740_10190Not AvailablePositive104941 - 10728387404.6
hypothetical proteinSAMN05421740_10191Not AvailablePositive107280 - 10853045183.6
metallo-beta-lactamase class bSAMN05421740_10192Not AvailablePositive108537 - 10972444883.1
40-residue yvtn family beta-propeller repeat-containing proteinSAMN05421740_10193Not AvailablePositive109757 - 11080936814.5
lactonase, 7-bladed beta-propellerSAMN05421740_10194Not AvailablePositive110843 - 11187436560.6
iron complex transport system substrate-binding proteinSAMN05421740_10195Not AvailablePositive111912 - 11302140217.2
iron complex transport system permease proteinSAMN05421740_10196Not AvailablePositive113032 - 11407836737.1
iron complex transport system atp-binding proteinSAMN05421740_10197Not AvailablePositive114092 - 11487127663.1

Displaying genes 91 – 100 of 4876 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.