Pedobacter steynii strain DSM 19110

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter steynii strain DSM 19110 is a bacterium notable for its motility, as it possesses flagella, which facilitate movement. This trait is significant for its ecological interactions, potentially aiding in the colonization of diverse environments. The strain has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various ecological niches. The genomic information for Pedobacter steynii can be accessed under the accession number FNGY00000000.1, which provides a basis for further genomic studies and comparisons with other strains within the Pedobacter genus. As a member of the Pedobacter genus, this strain may play a role in soil and aquatic ecosystems, where it could participate in nutrient cycling and the decomposition of organic matter. Understanding the traits of Pedobacter steynii strain DSM 19110 enhances our knowledge of its ecological role and potential applications in biotechnology or environmental management. The presence of flagella suggests that this strain may be involved in dynamic interactions within its habitat, influencing microbial community structures and functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter steynii
Strainstrain DSM 19110

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter steynii strain DSM 19110 genome assembly, contig:

Gene Summary

Adenine Count

2344384 bp

Thymine Count

2349892 bp

Guanine Count

1702492 bp

Cytosine Count

1663617 bp

Genome Length

8060701 bp

Protein-coding Genes

6672 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cupin-like domain-containing proteinSAMN05421820_110224Not AvailableNegative6235844 - 623672534289.2
uncaracterized surface protein containing fasciclin (fas1) repeatsSAMN05421820_110225Not AvailableNegative6237132 - 623767719073.5
uncharacterized conserved protein, duf1800 familySAMN05421820_110226Not AvailablePositive6237823 - 623969469868.8
uncharacterized conserved protein, duf1501 familySAMN05421820_110227Not AvailablePositive6239705 - 624097045477.3
formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domainSAMN05421820_110228Not AvailablePositive6241069 - 624222042370.6
protein of unknown functionSAMN05421820_110229Not AvailableNegative6242253 - 624356948270.9
beta-galactosidaseSAMN05421820_110230Not AvailablePositive6243719 - 6246877120387.0
putative membrane proteinSAMN05421820_110231Not AvailableNegative6247022 - 624734511557.1
hypothetical proteinSAMN05421820_110232Not AvailablePositive6247496 - 624803520859.0
short-chain dehydrogenaseSAMN05421820_110233Not AvailableNegative6248028 - 624881328567.0

Displaying genes 5191 – 5200 of 6741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.