Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter steynii |
| Strain | strain DSM 19110 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2344384 bp
Thymine Count
2349892 bp
Guanine Count
1702492 bp
Cytosine Count
1663617 bp
Genome Length
8060701 bp
Protein-coding Genes
6672 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein ypha, doxx/surf4 family | SAMN05421820_105419 | Not Available | Positive | 4084060 - 4085250 | 44702.1 |
| peptide/nickel transport system permease protein | SAMN05421820_105420 | Not Available | Positive | 4085254 - 4086309 | 39256.6 |
| shikimate kinase | SAMN05421820_105421 | Not Available | Positive | 4086314 - 4086820 | 18896.7 |
| acyl-coa hydrolase | SAMN05421820_105422 | Not Available | Negative | 4086817 - 4087215 | 15004.9 |
| uncharacterized membrane protein ypha, doxx/surf4 family | SAMN05421820_105423 | Not Available | Negative | 4087289 - 4087738 | 16672.3 |
| regulatory protein, tetr family | SAMN05421820_105424 | Not Available | Positive | 4088279 - 4088995 | 27399.9 |
| trna pseudouridine38-40 synthase | SAMN05421820_105425 | Not Available | Negative | 4088961 - 4089761 | 30618.2 |
| hexosaminidase | SAMN05421820_105426 | Not Available | Negative | 4089766 - 4091694 | 72419.3 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN05421820_105427 | Not Available | Negative | 4091800 - 4093287 | 53904.6 |
| aspartate-semialdehyde dehydrogenase | SAMN05421820_105428 | Not Available | Negative | 4093311 - 4094300 | 36313.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

