Pedobacter steynii strain DSM 19110

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter steynii strain DSM 19110 is a bacterium notable for its motility, as it possesses flagella, which facilitate movement. This trait is significant for its ecological interactions, potentially aiding in the colonization of diverse environments. The strain has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various ecological niches. The genomic information for Pedobacter steynii can be accessed under the accession number FNGY00000000.1, which provides a basis for further genomic studies and comparisons with other strains within the Pedobacter genus. As a member of the Pedobacter genus, this strain may play a role in soil and aquatic ecosystems, where it could participate in nutrient cycling and the decomposition of organic matter. Understanding the traits of Pedobacter steynii strain DSM 19110 enhances our knowledge of its ecological role and potential applications in biotechnology or environmental management. The presence of flagella suggests that this strain may be involved in dynamic interactions within its habitat, influencing microbial community structures and functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter steynii
Strainstrain DSM 19110

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter steynii strain DSM 19110 genome assembly, contig:

Gene Summary

Adenine Count

2344384 bp

Thymine Count

2349892 bp

Guanine Count

1702492 bp

Cytosine Count

1663617 bp

Genome Length

8060701 bp

Protein-coding Genes

6672 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptor plug domainSAMN05421820_105389Not AvailableNegative4051354 - 405399998450.6
ferric-dicitrate binding protein ferr, regulates iron transport through sigma-19SAMN05421820_105390Not AvailableNegative4054111 - 405510037134.3
rna polymerase sigma-70 factor, ecf subfamilySAMN05421820_105391Not AvailableNegative4055148 - 405575623833.7
calcineurin-like phosphoesteraseSAMN05421820_105392Not AvailableNegative4056011 - 405714142562.9
hth domain-containing proteinSAMN05421820_105393Not AvailablePositive4057338 - 405805127345.8
predicted transcriptional regulator ydee, contains arac-type dna-binding domainSAMN05421820_105394Not AvailablePositive4058103 - 405856117002.8
putative endopeptidaseSAMN05421820_105395Not AvailablePositive4058628 - 406067075737.5
cbs domain-containing proteinSAMN05421820_105396Not AvailableNegative4060730 - 406115815876.5
gh3 auxin-responsive promoterSAMN05421820_105397Not AvailableNegative4061234 - 406274558554.9
lipopolysaccharide export system atp-binding proteinSAMN05421820_105398Not AvailableNegative4062765 - 406349927356.3

Displaying genes 3331 – 3340 of 6741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.