Pedobacter steynii strain DSM 19110

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter steynii strain DSM 19110 is a bacterium notable for its motility, as it possesses flagella, which facilitate movement. This trait is significant for its ecological interactions, potentially aiding in the colonization of diverse environments. The strain has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various ecological niches. The genomic information for Pedobacter steynii can be accessed under the accession number FNGY00000000.1, which provides a basis for further genomic studies and comparisons with other strains within the Pedobacter genus. As a member of the Pedobacter genus, this strain may play a role in soil and aquatic ecosystems, where it could participate in nutrient cycling and the decomposition of organic matter. Understanding the traits of Pedobacter steynii strain DSM 19110 enhances our knowledge of its ecological role and potential applications in biotechnology or environmental management. The presence of flagella suggests that this strain may be involved in dynamic interactions within its habitat, influencing microbial community structures and functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter steynii
Strainstrain DSM 19110

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter steynii strain DSM 19110 genome assembly, contig:

Gene Summary

Adenine Count

2344384 bp

Thymine Count

2349892 bp

Guanine Count

1702492 bp

Cytosine Count

1663617 bp

Genome Length

8060701 bp

Protein-coding Genes

6672 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rnd family efflux transporter, mfp subunitSAMN05421820_105359Not AvailableNegative4028813 - 402987738034.0
outer membrane protein tolcSAMN05421820_105360Not AvailableNegative4029874 - 403123250377.8
tetr/acrr family transcriptional regulator, mexjk operon transcriptional repressorSAMN05421820_105361Not AvailableNegative4031257 - 403186223148.1
tetr/acrr family transcriptional regulator, mexjk operon transcriptional repressorSAMN05421820_105362Not AvailableNegative4031978 - 403258623291.6
udp-n-acetylmuramate dehydrogenaseSAMN05421820_105363Not AvailablePositive4032712 - 403376138496.1
rna polymerase sigma-70 factor, ecf subfamilySAMN05421820_105364Not AvailablePositive4033927 - 403445720312.4
lycopene cyclase domain-containing proteinSAMN05421820_105365Not AvailablePositive4034578 - 403524925262.9
predicted heme/steroid binding proteinSAMN05421820_105366Not AvailablePositive4035249 - 40354859161.84
sugar or nucleoside kinase, ribokinase familySAMN05421820_105367Not AvailableNegative4035529 - 403644933980.9
Trna-asnNot AvailableNot AvailablePositive4036594 - 4036670Not Available

Displaying genes 3301 – 3310 of 6741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.