Pedobacter steynii strain DSM 19110

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter steynii strain DSM 19110 is a bacterium notable for its motility, as it possesses flagella, which facilitate movement. This trait is significant for its ecological interactions, potentially aiding in the colonization of diverse environments. The strain has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various ecological niches. The genomic information for Pedobacter steynii can be accessed under the accession number FNGY00000000.1, which provides a basis for further genomic studies and comparisons with other strains within the Pedobacter genus. As a member of the Pedobacter genus, this strain may play a role in soil and aquatic ecosystems, where it could participate in nutrient cycling and the decomposition of organic matter. Understanding the traits of Pedobacter steynii strain DSM 19110 enhances our knowledge of its ecological role and potential applications in biotechnology or environmental management. The presence of flagella suggests that this strain may be involved in dynamic interactions within its habitat, influencing microbial community structures and functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter steynii
Strainstrain DSM 19110

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter steynii strain DSM 19110 genome assembly, contig:

Gene Summary

Adenine Count

2344384 bp

Thymine Count

2349892 bp

Guanine Count

1702492 bp

Cytosine Count

1663617 bp

Genome Length

8060701 bp

Protein-coding Genes

6672 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05421820_104416Not AvailablePositive3573041 - 357345714862.3
crp/fnr family transcriptional regulator, anaerobic regulatory proteinSAMN05421820_104417Not AvailableNegative3573463 - 357414925841.6
duf218 domain-containing proteinSAMN05421820_104418Not AvailableNegative3574248 - 357549846775.7
susd family proteinSAMN05421820_104419Not AvailableNegative3575580 - 357695050649.2
tonb-linked outer membrane protein, susc/raga familySAMN05421820_104420Not AvailableNegative3576962 - 3580255118599.0
fecr proteinSAMN05421820_104421Not AvailableNegative3580345 - 358136738263.0
rna polymerase sigma-70 factor, ecf subfamilySAMN05421820_104422Not AvailableNegative3581428 - 358197621493.0
l-ascorbate metabolism protein ulag, beta-lactamase superfamilySAMN05421820_104423Not AvailableNegative3582092 - 358368161028.3
outer membrane receptor proteins, mostly fe transportSAMN05421820_104424Not AvailableNegative3583694 - 358616593130.9
surfactin synthase thioesterase subunitSAMN05421820_104425Not AvailableNegative3586200 - 358690427027.2

Displaying genes 2931 – 2940 of 6741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.