Pedobacter steynii strain DSM 19110

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter steynii strain DSM 19110 is a bacterium notable for its motility, as it possesses flagella, which facilitate movement. This trait is significant for its ecological interactions, potentially aiding in the colonization of diverse environments. The strain has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various ecological niches. The genomic information for Pedobacter steynii can be accessed under the accession number FNGY00000000.1, which provides a basis for further genomic studies and comparisons with other strains within the Pedobacter genus. As a member of the Pedobacter genus, this strain may play a role in soil and aquatic ecosystems, where it could participate in nutrient cycling and the decomposition of organic matter. Understanding the traits of Pedobacter steynii strain DSM 19110 enhances our knowledge of its ecological role and potential applications in biotechnology or environmental management. The presence of flagella suggests that this strain may be involved in dynamic interactions within its habitat, influencing microbial community structures and functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter steynii
Strainstrain DSM 19110

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter steynii strain DSM 19110 genome assembly, contig:

Gene Summary

Adenine Count

2344384 bp

Thymine Count

2349892 bp

Guanine Count

1702492 bp

Cytosine Count

1663617 bp

Genome Length

8060701 bp

Protein-coding Genes

6672 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-2,4-diaminobutyrate decarboxylaseSAMN05421820_103525Not AvailableNegative2633979 - 263550256187.1
iron complex outermembrane recepter proteinSAMN05421820_103526Not AvailableNegative2635590 - 263820295602.5
ferric-dicitrate binding protein ferr, regulates iron transport through sigma-19SAMN05421820_103527Not AvailableNegative2638284 - 263924936123.5
rna polymerase sigma-70 factor, ecf subfamilySAMN05421820_103528Not AvailableNegative2639376 - 263992121503.6
predicted nuclease of restriction endonuclease-like (recb) superfamily, duf1016 familySAMN05421820_103529Not AvailablePositive2640191 - 264118038651.5
glycosyl hydrolase family 88SAMN05421820_103530Not AvailableNegative2641239 - 264250447869.8
starch-binding associating with outer membraneSAMN05421820_103531Not AvailableNegative2642536 - 264435366444.0
tonb-linked outer membrane protein, susc/raga familySAMN05421820_103532Not AvailableNegative2644371 - 2647490114230.0
chondroitin ac lyaseSAMN05421820_103533Not AvailableNegative2647609 - 264972079128.3
arylsulfatase aSAMN05421820_103534Not AvailableNegative2649737 - 265117353237.9

Displaying genes 2211 – 2220 of 6741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.