Pedobacter steynii strain DSM 19110

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter steynii strain DSM 19110 is a bacterium notable for its motility, as it possesses flagella, which facilitate movement. This trait is significant for its ecological interactions, potentially aiding in the colonization of diverse environments. The strain has a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability and efficiency in various ecological niches. The genomic information for Pedobacter steynii can be accessed under the accession number FNGY00000000.1, which provides a basis for further genomic studies and comparisons with other strains within the Pedobacter genus. As a member of the Pedobacter genus, this strain may play a role in soil and aquatic ecosystems, where it could participate in nutrient cycling and the decomposition of organic matter. Understanding the traits of Pedobacter steynii strain DSM 19110 enhances our knowledge of its ecological role and potential applications in biotechnology or environmental management. The presence of flagella suggests that this strain may be involved in dynamic interactions within its habitat, influencing microbial community structures and functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter steynii
Strainstrain DSM 19110

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter steynii strain DSM 19110 genome assembly, contig:

Gene Summary

Adenine Count

2344384 bp

Thymine Count

2349892 bp

Guanine Count

1702492 bp

Cytosine Count

1663617 bp

Genome Length

8060701 bp

Protein-coding Genes

6672 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trypsin-like peptidase domain-containing proteinSAMN05421820_102491Not AvailablePositive1623128 - 162422540449.4
hypothetical proteinSAMN05421820_102492Not AvailableNegative1624336 - 162561649038.0
alpha-1,2-mannosidase, putativeSAMN05421820_102493Not AvailablePositive1625802 - 162811787047.5
beta-glucosidaseSAMN05421820_102494Not AvailablePositive1628143 - 1631835135073.0
tonb-linked outer membrane protein, susc/raga familySAMN05421820_102495Not AvailablePositive1631934 - 1634975110698.0
starch-binding associating with outer membraneSAMN05421820_102496Not AvailablePositive1634986 - 163642553300.6
pectate lyase superfamily proteinSAMN05421820_102497Not AvailablePositive1636463 - 163846672069.0
uncharacterized conserved protein yece, duf72 familySAMN05421820_102498Not AvailablePositive1638731 - 163967836385.3
alkyl hydroperoxide reductase subunit ahpc (peroxiredoxin)SAMN05421820_102499Not AvailablePositive1639731 - 164036623435.8
hypothetical proteinSAMN05421820_102500Not AvailablePositive1640437 - 164094619021.9

Displaying genes 1381 – 1390 of 6741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.