Rhodococcus tukisamuensis strain JCM 11308

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus tukisamuensis strain JCM 11308 is a mesophilic bacterium characterized by the presence of flagella, which suggests motility in its habitat. This strain thrives optimally at a temperature of 29°C, indicating its preference for warm environments within the mesophilic range. The genomic structure of R. tukisamuensis JCM 11308 is notable for having a single replicon, which may reflect a stable genetic organization. The sequence data for this strain is available under the accession FNAB00000000.1, providing a resource for further genomic studies. Ecologically, the presence of flagella in R. tukisamuensis JCM 11308 may facilitate its movement in various environments, potentially allowing it to colonize diverse substrates or interact with other microorganisms. This motility could contribute to its ecological role in nutrient cycling and bioremediation processes, which are often associated with the Rhodococcus genus.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus tukisamuensis
Strainstrain JCM 11308

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus tukisamuensis strain JCM 11308 genome assembly,

Gene Summary

Adenine Count

824122 bp

Thymine Count

831111 bp

Guanine Count

1926263 bp

Cytosine Count

1907513 bp

Genome Length

5489009 bp

Protein-coding Genes

4993 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydrogenaseSAMN05444580_108111Not AvailablePositive3586843 - 358795238700.3
polar amino acid transport system substrate-binding proteinSAMN05444580_108112Not AvailablePositive3588016 - 358894532739.8
polar amino acid transport system permease proteinSAMN05444580_108113Not AvailablePositive3588958 - 358995035654.7
amino acid abc transporter atp-binding protein, paat familySAMN05444580_108114Not AvailablePositive3589947 - 359070827777.9
regulator of protease activity hflc, stomatin/prohibitin superfamilySAMN05444580_108115Not AvailablePositive3590790 - 359163829871.1
hypothetical proteinSAMN05444580_108116Not AvailablePositive3591654 - 35918155925.1
hypothetical proteinSAMN05444580_108117Not AvailableNegative3591888 - 359239418059.2
dna polymerase iii beta subunit, central domainSAMN05444580_108118Not AvailableNegative3592391 - 359347638490.8
hicb family proteinSAMN05444580_108119Not AvailablePositive3593762 - 359430418816.2
duf4097 and duf4098 domain-containing protein yvlbSAMN05444580_108120Not AvailablePositive3594373 - 359521228726.6

Displaying genes 3351 – 3360 of 5055 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.