MAG TPA_asm: Flavobacterium sp.

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

MAG TPA_asm represents a strain of Flavobacterium sp., characterized as a Gram-negative, rod-shaped bacterium with true flagella, indicating motility. This bacterium is strictly aerobic, requiring oxygen for its metabolic processes. It possesses a single replicon, which is typical for many bacterial species. Flavobacterium sp. is notably found in diverse habitats including nasal discharge and natural springs. This adaptability to various environments suggests its potential ecological significance, particularly in aquatic ecosystems. The bacterium has been identified as a host-associated organism, with known associations to several species including Oncorhynchus mykiss (rainbow trout), Oscheius, Gymnogongrus flabelliformis, Fushitsunagia catenata, Saccharina japonica, Ulva fasciata, Ulva pertusa, and Sargassum thunbergii. Importantly, Flavobacterium sp. has been implicated in health issues for aquatic organisms, specifically contributing to gill diseases, including Bacterial Gill Disease. This highlights the bacterium’s role in the health dynamics of its hosts, which can have significant implications for aquaculture and natural fish populations. In summary, Flavobacterium sp. exhibits a range of ecological interactions and health impacts, particularly in aquatic environments. Its presence in both natural and host-associated settings underlines its importance in microbial ecology and potential influence on the health of aquatic organisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of MAG TPA_asm: Flavobacterium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnasal discharge; natural spring
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Oscheius, Gymnogongrus flabelliformis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Flavobacterium sp. isolate UBA10157 contig_15341,

Gene Summary

Adenine Count

673027 bp

Thymine Count

685544 bp

Guanine Count

374157 bp

Cytosine Count

361052 bp

Genome Length

2093788 bp

Protein-coding Genes

1898 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell surface protein spraDER08_05615Not AvailablePositive1191065 - 1198225267865.0
glycine cleavage system protein gcvhDER08_05620Not AvailablePositive1198310 - 119869013730.0
hypothetical proteinDER08_05625Not AvailablePositive1198683 - 119906314429.0
hypothetical proteinDER08_05630Not AvailablePositive1199111 - 120025040634.1
protoheme ix farnesyltransferaseDER08_05635Not AvailablePositive1200337 - 120123933131.7
cytochrome oxidase subunit iiiDER08_05640Not AvailablePositive1201242 - 120182922354.1
cytochrome oxidase subunit iiiDER08_05645Not AvailablePositive1201873 - 120285036923.7
cytochrome c oxidase subunit ivDER08_05650Not AvailablePositive1202872 - 120322213569.9
hypothetical proteinDER08_05655Not AvailablePositive1203301 - 120394224481.5
sco family proteinDER08_05660Not AvailablePositive1203953 - 120463625206.3

Displaying genes 1121 – 1130 of 1936 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Gill diseasesCausesPMC11294328
Bacterial gill diseaseCausesPMC11294328

Displaying health effects 1 – 2 of 2 in total