MAG TPA_asm: Flavobacterium sp.

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

MAG TPA_asm represents a strain of Flavobacterium sp., characterized as a Gram-negative, rod-shaped bacterium with true flagella, indicating motility. This bacterium is strictly aerobic, requiring oxygen for its metabolic processes. It possesses a single replicon, which is typical for many bacterial species. Flavobacterium sp. is notably found in diverse habitats including nasal discharge and natural springs. This adaptability to various environments suggests its potential ecological significance, particularly in aquatic ecosystems. The bacterium has been identified as a host-associated organism, with known associations to several species including Oncorhynchus mykiss (rainbow trout), Oscheius, Gymnogongrus flabelliformis, Fushitsunagia catenata, Saccharina japonica, Ulva fasciata, Ulva pertusa, and Sargassum thunbergii. Importantly, Flavobacterium sp. has been implicated in health issues for aquatic organisms, specifically contributing to gill diseases, including Bacterial Gill Disease. This highlights the bacterium’s role in the health dynamics of its hosts, which can have significant implications for aquaculture and natural fish populations. In summary, Flavobacterium sp. exhibits a range of ecological interactions and health impacts, particularly in aquatic environments. Its presence in both natural and host-associated settings underlines its importance in microbial ecology and potential influence on the health of aquatic organisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium sp.
StrainMAG TPA_asm:

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of MAG TPA_asm: Flavobacterium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnasal discharge; natural spring
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Oscheius, Gymnogongrus flabelliformis
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Flavobacterium sp. isolate UBA10157 contig_15341,

Gene Summary

Adenine Count

673027 bp

Thymine Count

685544 bp

Guanine Count

374157 bp

Cytosine Count

361052 bp

Genome Length

2093788 bp

Protein-coding Genes

1898 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
adenosylhomocysteinaseDER08_05215Not AvailablePositive1097546 - 109886248085.9
duf1761 domain-containing proteinDER08_05220Not AvailablePositive1098990 - 109947818082.7
50s ribosomal protein l27DER08_05225Not AvailableNegative1099556 - 10998169402.32
50s ribosomal protein l21DER08_05230Not AvailableNegative1099842 - 110028816044.7
peptidase m16DER08_05235Not AvailablePositive1100540 - 110186550244.9
peptidase m16DER08_05240Not AvailablePositive1101922 - 110392272818.8
permeaseDER08_05245Not AvailableNegative1103971 - 110483731579.0
heavy metal transporterDER08_05250Not AvailablePositive1104934 - 110531113394.2
gliding motility lipoprotein glddDER08_05255Not AvailableNegative1105362 - 110592521654.2
single-stranded dna-binding proteinDER08_05260Not AvailableNegative1105952 - 110636515713.6

Displaying genes 1041 – 1050 of 1936 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Gill diseasesCausesPMC11294328
Bacterial gill diseaseCausesPMC11294328

Displaying health effects 1 – 2 of 2 in total