Cereibacter sphaeroides f. sp. denitrificans strain IL106

Gram-negativeRodMotileAerobe; anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Cereibacter

Description

Cereibacter sphaeroides f. sp. denitrificans strain IL106 is a Gram-negative, rod-shaped bacterium that exhibits a unique ability to thrive in multiple habitats. This organism is notable for its photosynthetic energy source, enabling it to harness light for metabolism. It can function as both an aerobe and an anaerobe, showcasing its metabolic versatility under varying oxygen conditions. The cells of C. sphaeroides strain IL106 are arranged in chains and possess mobility, facilitated by the presence of flagella. This flagellar structure allows the bacterium to navigate its environment effectively. It operates optimally at a temperature of 25°C and is classified as mesophilic, indicating that it can grow within a temperature range that is moderate compared to extremophiles. C. sphaeroides f. sp. denitrificans is characterized by having four replicons and two membranes, which are typical features of many bacteria in its classification. It exists freely in the environment and has a biotic relationship with Triticum aestivum (wheat), indicating its potential role in agricultural ecosystems. The ability of C. sphaeroides strain IL106 to engage in denitrification processes may provide ecological insights into nutrient cycling in its habitats. By participating in nitrogen transformations, this bacterium could influence soil health and fertility, particularly in association with crops such as wheat. This relationship highlights the importance of microbial diversity in sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusCereibacter
SpeciesCereibacter sphaeroides
Strainf. sp. denitrificans strain IL106

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Cereibacter sphaeroides f. sp. denitrificans strain IL106
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe; anaerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Triticum aestivum
Cell arrangementChains
SporulationNot Available
Energy sourcePhotosynthetic
PathogenicityNot Available

Genome Summary

Cereibacter sphaeroides f. sp. denitrificans strain IL106


Gene Summary

Adenine Count

20240 bp

Thymine Count

19806 bp

Guanine Count

46684 bp

Cytosine Count

46301 bp

Genome Length

133180 bp

Protein-coding Genes

122 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-hydroxyacyl-coa dehydrogenaseDWF04_022780Not AvailableNegative121 - 105633830.7
gntr family transcriptional regulatorDWF04_022785Not AvailablePositive1229 - 197527628.7
sdr family oxidoreductaseDWF04_022790Not AvailablePositive1979 - 277027829.9
extracellular solute-binding proteinDWF04_022795Not AvailablePositive2784 - 318515028.3
extracellular solute-binding proteinDWF04_022800Not AvailableNegative3207 - 543479257.3
fad:protein fmn transferaseDWF04_022805Not AvailableNegative5766 - 666831102.5
nitrous oxide reductase accessory protein noslDWF04_022810Not AvailableNegative6673 - 721519004.5
abc transporter permease subunitDWF04_022815Not AvailableNegative7212 - 803327485.2
abc transporter atp-binding proteinDWF04_022820Not AvailableNegative8030 - 891431063.7
nitrous oxide reductase family maturation protein nosdDWF04_022825Not AvailableNegative8889 - 1020847230.3

Displaying genes 1 – 10 of 4682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

20 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002658prostaglandin E1C20H33O5Chemical structure of prostaglandin E1745-65-3
Average353.48Da
Monoisotopic353.2333477Da

Displaying 1–10 of 20 metabolites

Health Effects

No health effects information available for this bacterium.