Cereibacter sphaeroides f. sp. denitrificans strain IL106

Gram-negativeRodMotileAerobe; anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Cereibacter

Description

Cereibacter sphaeroides f. sp. denitrificans strain IL106 is a Gram-negative, rod-shaped bacterium that typically forms chains. This strain exhibits a versatile metabolism, utilizing photosynthesis as its primary energy source, which allows it to thrive in a variety of habitats. It is noteworthy that C. sphaeroides f. sp. denitrificans strain IL106 is capable of both aerobic and anaerobic respiration, enhancing its adaptability to fluctuating environmental oxygen levels. The optimal growth temperature for this strain is 25.0°C, indicating a mesophilic nature that may favor its proliferation in temperate environments. The ability to grow in multiple habitats suggests that this bacterium could occupy ecological niches ranging from aquatic to terrestrial ecosystems, where it may play a role in nutrient cycling, particularly in the nitrogen cycle due to its denitrifying capabilities. This strain's dual respiratory capabilities potentially allow it to contribute to both carbon fixation and the reduction of nitrates, highlighting its ecological significance in maintaining soil and water quality. Overall, C. sphaeroides f. sp. denitrificans strain IL106 exemplifies the adaptability of microbial life forms, reflecting their essential roles in diverse biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusCereibacter
SpeciesCereibacter sphaeroides
Strainf. sp. denitrificans strain IL106

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Cereibacter sphaeroides f. sp. denitrificans strain IL106
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe; anaerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains
SporulationNot Available
Energy sourcePhotosynthetic
PathogenicityNot Available

Genome Summary

Cereibacter sphaeroides f. sp. denitrificans strain IL106


Gene Summary

Adenine Count

20240 bp

Thymine Count

19806 bp

Guanine Count

46684 bp

Cytosine Count

46301 bp

Genome Length

133180 bp

Protein-coding Genes

122 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
3-hydroxyacyl-coa dehydrogenaseDWF04_022780Not Available-121 - 105633830.7
gntr family transcriptional regulatorDWF04_022785Not Available+1229 - 197527628.7
sdr family oxidoreductaseDWF04_022790Not Available+1979 - 277027829.9
extracellular solute-binding proteinDWF04_022795Not Available+2784 - 318515028.3
extracellular solute-binding proteinDWF04_022800Not Available-3207 - 543479257.3
fad:protein fmn transferaseDWF04_022805Not Available-5766 - 666831102.5
nitrous oxide reductase accessory protein noslDWF04_022810Not Available-6673 - 721519004.5
abc transporter permease subunitDWF04_022815Not Available-7212 - 803327485.2
abc transporter atp-binding proteinDWF04_022820Not Available-8030 - 891431063.7
nitrous oxide reductase family maturation protein nosdDWF04_022825Not Available-8889 - 1020847230.3

Displaying genes 1 – 10 of 4682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

20 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002658prostaglandin E1C20H33O5Chemical structure of prostaglandin E1745-65-3
Average353.48Da
Monoisotopic353.2333477Da

Displaying 1–10 of 20 metabolites