Geobacter sp. OR-1

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Geobacterales

Family

Geobacteraceae

Genus

Geobacter

Description

Geobacter sp. OR-1 is a Gram-negative bacterium primarily found in groundwater habitats. This species possesses flagella, which suggests a capability for motility in its aquatic environment. Genomic analysis reveals that Geobacter sp. OR-1 has a single replicon, indicating a streamlined genetic organization that is often characteristic of bacteria adapted to specific ecological niches. The presence of Geobacter sp. OR-1 in groundwater is significant, as members of the Geobacter genus are known for their unique metabolic capabilities, including the ability to reduce metals and facilitate the bioremediation of contaminated environments. Their flagella may play a crucial role in navigating through groundwater, allowing them to colonize and thrive in various microenvironments. Given these traits, Geobacter sp. OR-1 not only contributes to the microbial diversity of groundwater ecosystems but also may have potential applications in environmental biotechnology. The ability of such bacteria to interact with their surroundings and participate in biogeochemical cycles suggests they could be vital for maintaining the health of groundwater systems and addressing issues related to pollution. The accession number for the genomic data of Geobacter sp. OR-1 is BAZF00000000.1, which provides a basis for further research into its ecological roles and potential applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusGeobacter
SpeciesGeobacter sp. OR-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgroundwater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geobacter sp. OR-1 DNA, contig: OR1_contig000063, whole genome

Gene Summary

Adenine Count

1048586 bp

Thymine Count

1038027 bp

Guanine Count

1211673 bp

Cytosine Count

1255980 bp

Genome Length

4554266 bp

Protein-coding Genes

4144 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylmalonyl-coa epimeraseOR1_04051Not AvailableNegative4390778 - 439117614489.5
putative methylmalonyl-coa mutase, mitochondrialOR1_04052Not AvailableNegative4391259 - 439291460734.6
putative thymidylate kinaseOR1_04053Not AvailableNegative4392963 - 439359823727.5
biotin carboxylaseOR1_04054Not AvailableNegative4393817 - 4396696107185.0
putative propionyl-coa carboxylase beta chain 5OR1_04055Not AvailableNegative4396822 - 439854662324.8
hth-type transcriptional regulator puurOR1_04056Not AvailableNegative4398654 - 439921721143.2
putative glycolate oxidase iron-sulfur subunitOR1_04057Not AvailableNegative4399512 - 440079846278.9
glycolate oxidase subunit glcdOR1_04058Not AvailableNegative4400824 - 440220349867.8
hypothetical proteinOR1_04059Not AvailableNegative4402268 - 440352745480.7
Trna-pheNot AvailableNot AvailablePositive4403671 - 4403746Not Available

Displaying genes 4051 – 4060 of 4207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.