Geobacter sp. OR-1

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Geobacterales

Family

Geobacteraceae

Genus

Geobacter

Description

Geobacter sp. OR-1 is a Gram-negative bacterium primarily found in groundwater habitats. This species possesses flagella, which suggests a capability for motility in its aquatic environment. Genomic analysis reveals that Geobacter sp. OR-1 has a single replicon, indicating a streamlined genetic organization that is often characteristic of bacteria adapted to specific ecological niches. The presence of Geobacter sp. OR-1 in groundwater is significant, as members of the Geobacter genus are known for their unique metabolic capabilities, including the ability to reduce metals and facilitate the bioremediation of contaminated environments. Their flagella may play a crucial role in navigating through groundwater, allowing them to colonize and thrive in various microenvironments. Given these traits, Geobacter sp. OR-1 not only contributes to the microbial diversity of groundwater ecosystems but also may have potential applications in environmental biotechnology. The ability of such bacteria to interact with their surroundings and participate in biogeochemical cycles suggests they could be vital for maintaining the health of groundwater systems and addressing issues related to pollution. The accession number for the genomic data of Geobacter sp. OR-1 is BAZF00000000.1, which provides a basis for further research into its ecological roles and potential applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusGeobacter
SpeciesGeobacter sp. OR-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgroundwater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geobacter sp. OR-1 DNA, contig: OR1_contig000063, whole genome

Gene Summary

Adenine Count

1048586 bp

Thymine Count

1038027 bp

Guanine Count

1211673 bp

Cytosine Count

1255980 bp

Genome Length

4554266 bp

Protein-coding Genes

4144 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cyclic pyranopterin monophosphate synthase accessory proteinOR1_03761Not AvailableNegative4078833 - 407931216888.5
molybdopterin molybdenumtransferaseOR1_03762Not AvailableNegative4079509 - 408072643665.0
molybdate/tungstate import atp-binding protein wtpcOR1_03763Not AvailableNegative4080757 - 408187240206.8
putative anion abc transporter permease proteinOR1_03764Not AvailableNegative4081869 - 408256724540.2
putative abc transporter anion-binding proteinOR1_03765Not AvailableNegative4082567 - 408342430353.9
adenylyltransferase and sulfurtransferase mocs3-1OR1_03766Not AvailableNegative4083887 - 408475931740.5
this family proteinOR1_03767Not AvailableNegative4084716 - 40849408062.86
hypothetical proteinOR1_03768Not AvailableNegative4084937 - 408555422233.9
tungsten-containing aldehyde ferredoxin oxidoreductaseOR1_03769Not AvailableNegative4085798 - 408753461412.6
putative mycofactocin biosynthesis glycosyltransferase mftfOR1_03770Not AvailableNegative4087751 - 408918452517.9

Displaying genes 3761 – 3770 of 4207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.