Geobacter sp. OR-1

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Geobacterales

Family

Geobacteraceae

Genus

Geobacter

Description

Geobacter sp. OR-1 is a Gram-negative bacterium primarily found in groundwater habitats. This species possesses flagella, which suggests a capability for motility in its aquatic environment. Genomic analysis reveals that Geobacter sp. OR-1 has a single replicon, indicating a streamlined genetic organization that is often characteristic of bacteria adapted to specific ecological niches. The presence of Geobacter sp. OR-1 in groundwater is significant, as members of the Geobacter genus are known for their unique metabolic capabilities, including the ability to reduce metals and facilitate the bioremediation of contaminated environments. Their flagella may play a crucial role in navigating through groundwater, allowing them to colonize and thrive in various microenvironments. Given these traits, Geobacter sp. OR-1 not only contributes to the microbial diversity of groundwater ecosystems but also may have potential applications in environmental biotechnology. The ability of such bacteria to interact with their surroundings and participate in biogeochemical cycles suggests they could be vital for maintaining the health of groundwater systems and addressing issues related to pollution. The accession number for the genomic data of Geobacter sp. OR-1 is BAZF00000000.1, which provides a basis for further research into its ecological roles and potential applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusGeobacter
SpeciesGeobacter sp. OR-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgroundwater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geobacter sp. OR-1 DNA, contig: OR1_contig000063, whole genome

Gene Summary

Adenine Count

1048586 bp

Thymine Count

1038027 bp

Guanine Count

1211673 bp

Cytosine Count

1255980 bp

Genome Length

4554266 bp

Protein-coding Genes

4144 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadp-reducing hydrogenase subunit hndaOR1_03541Not AvailablePositive3851652 - 385217319161.2
nadp-reducing hydrogenase subunit hndcOR1_03542Not AvailablePositive3852214 - 385399564370.3
nadph-fe(3+) oxidoreductase subunit alphaOR1_03543Not AvailablePositive3854039 - 385652588384.2
nadh-quinone oxidoreductase subunit h 1OR1_03544Not AvailablePositive3856575 - 385761238458.1
nadh-quinone oxidoreductase subunit i 1OR1_03545Not AvailablePositive3857642 - 385804015007.6
nad(p)h-quinone oxidoreductase subunit 6, chloroplasticOR1_03546Not AvailablePositive3858051 - 385855418118.2
nadh-quinone oxidoreductase subunit k 2OR1_03547Not AvailablePositive3858573 - 385887511158.1
nad(p)h-quinone oxidoreductase chain 5OR1_03548Not AvailablePositive3858921 - 386091273273.4
nadh-quinone oxidoreductase subunit mOR1_03549Not AvailablePositive3860953 - 386254558729.4
nadh-quinone oxidoreductase subunit nOR1_03550Not AvailablePositive3862581 - 386405652729.7

Displaying genes 3541 – 3550 of 4207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.