Geobacter sp. OR-1

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Geobacterales

Family

Geobacteraceae

Genus

Geobacter

Description

Geobacter sp. OR-1 is a Gram-negative bacterium primarily found in groundwater habitats. This species possesses flagella, which suggests a capability for motility in its aquatic environment. Genomic analysis reveals that Geobacter sp. OR-1 has a single replicon, indicating a streamlined genetic organization that is often characteristic of bacteria adapted to specific ecological niches. The presence of Geobacter sp. OR-1 in groundwater is significant, as members of the Geobacter genus are known for their unique metabolic capabilities, including the ability to reduce metals and facilitate the bioremediation of contaminated environments. Their flagella may play a crucial role in navigating through groundwater, allowing them to colonize and thrive in various microenvironments. Given these traits, Geobacter sp. OR-1 not only contributes to the microbial diversity of groundwater ecosystems but also may have potential applications in environmental biotechnology. The ability of such bacteria to interact with their surroundings and participate in biogeochemical cycles suggests they could be vital for maintaining the health of groundwater systems and addressing issues related to pollution. The accession number for the genomic data of Geobacter sp. OR-1 is BAZF00000000.1, which provides a basis for further research into its ecological roles and potential applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusGeobacter
SpeciesGeobacter sp. OR-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgroundwater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geobacter sp. OR-1 DNA, contig: OR1_contig000063, whole genome

Gene Summary

Adenine Count

1048586 bp

Thymine Count

1038027 bp

Guanine Count

1211673 bp

Cytosine Count

1255980 bp

Genome Length

4554266 bp

Protein-coding Genes

4144 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
topoisomerase dna binding c4 zinc fingerOR1_03411Not AvailableNegative3708171 - 370895028817.0
putative proteinOR1_03412Not AvailableNegative3709240 - 371164591058.6
dctp pyrophosphatase 1OR1_03413Not AvailableNegative3711674 - 371203614037.8
heme-binding-like protein at3g10130, chloroplasticOR1_03414Not AvailablePositive3712445 - 371306823178.9
glutathione peroxidaseOR1_03415Not AvailablePositive3713083 - 371357718074.5
hypothetical proteinOR1_03416Not AvailableNegative3713557 - 37138119884.9
hypothetical proteinOR1_03417Not AvailableNegative3713808 - 371456627963.9
fructokinaseOR1_03418Not AvailableNegative3714584 - 371550132424.8
antitoxin phd_yefm, type ii toxin-antitoxin systemOR1_03419Not AvailablePositive3715641 - 371591910290.4
plasmid stabilisation system proteinOR1_03420Not AvailablePositive3715903 - 371621711901.1

Displaying genes 3411 – 3420 of 4207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.