Geobacter sp. OR-1

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Geobacterales

Family

Geobacteraceae

Genus

Geobacter

Description

Geobacter sp. OR-1 is a Gram-negative bacterium primarily found in groundwater habitats. This species possesses flagella, which suggests a capability for motility in its aquatic environment. Genomic analysis reveals that Geobacter sp. OR-1 has a single replicon, indicating a streamlined genetic organization that is often characteristic of bacteria adapted to specific ecological niches. The presence of Geobacter sp. OR-1 in groundwater is significant, as members of the Geobacter genus are known for their unique metabolic capabilities, including the ability to reduce metals and facilitate the bioremediation of contaminated environments. Their flagella may play a crucial role in navigating through groundwater, allowing them to colonize and thrive in various microenvironments. Given these traits, Geobacter sp. OR-1 not only contributes to the microbial diversity of groundwater ecosystems but also may have potential applications in environmental biotechnology. The ability of such bacteria to interact with their surroundings and participate in biogeochemical cycles suggests they could be vital for maintaining the health of groundwater systems and addressing issues related to pollution. The accession number for the genomic data of Geobacter sp. OR-1 is BAZF00000000.1, which provides a basis for further research into its ecological roles and potential applications in bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderGeobacterales
FamilyGeobacteraceae
GenusGeobacter
SpeciesGeobacter sp. OR-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgroundwater
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geobacter sp. OR-1 DNA, contig: OR1_contig000063, whole genome

Gene Summary

Adenine Count

1048586 bp

Thymine Count

1038027 bp

Guanine Count

1211673 bp

Cytosine Count

1255980 bp

Genome Length

4554266 bp

Protein-coding Genes

4144 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
f420-non-reducing hydrogenase vhu subunit gOR1_00994Not AvailableNegative1072771 - 107372434679.7
hypothetical proteinOR1_00995Not AvailableNegative1073721 - 107425719958.2
hydrogenase nickel incorporation protein hypbOR1_00996Not AvailablePositive1074518 - 107526727253.5
carbamoyltransferase hypf2OR1_00997Not AvailablePositive1075322 - 107754479741.6
hydrogenase expression/formation protein hypcOR1_00998Not AvailablePositive1077551 - 10777818289.08
hydrogenase isoenzymes formation protein hypdOR1_00999Not AvailablePositive1077918 - 107900938712.1
hydrogenase expression/formation protein hypeOR1_01000Not AvailablePositive1079153 - 108016934652.1
quinone-reactive ni/fe-hydrogenase small chainOR1_01001Not AvailablePositive1080355 - 108148539911.6
uptake hydrogenase large subunitOR1_01002Not AvailablePositive1081491 - 108319162461.9
putative ni/fe-hydrogenase b-type cytochrome subunitOR1_01003Not AvailablePositive1083205 - 108387325757.6

Displaying genes 1011 – 1020 of 4207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.