Lentilactobacillus rapi DSM 19907 = JCM 15042 strain DSM 19907

Gram-positiveRod

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Lentilactobacillus

Description

Lentilactobacillus rapi DSM 19907, also known as JCM 15042, is a Gram-positive bacterium characterized by its rod-shaped morphology. This strain is notable for possessing a single replicon, which contributes to its genetic stability and adaptability in various environments. The strain is cataloged under the accession number AZEI00000000.1, indicating its inclusion in genomic databases for further exploration and study. The classification of Lentilactobacillus rapi within the Lactobacillus genus highlights its potential role in fermentation processes, particularly in the production of fermented foods. Lactobacillus species are known for their beneficial properties, including probiotic effects that can enhance gut health in humans and animals. The traits of this strain suggest it may contribute positively to microbial communities, particularly in dairy or plant-based fermentation. Biologically, the presence of a single replicon in Lentilactobacillus rapi DSM 19907 could imply a streamlined genetic framework, potentially facilitating efficient adaptation to specific ecological niches. This characteristic may enhance its survival and functionality in competitive environments, such as those found in fermented products. Understanding the traits of this strain can provide insights into its ecological interactions and applications in food science and microbiology.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLentilactobacillus
SpeciesLentilactobacillus rapi
StrainDSM 19907 = JCM 15042 strain DSM 19907

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lentilactobacillus rapi DSM 19907 = JCM 15042 strain DSM 19907


Gene Summary

Adenine Count

814228 bp

Thymine Count

814303 bp

Guanine Count

609522 bp

Cytosine Count

616421 bp

Genome Length

2854844 bp

Protein-coding Genes

2579 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinFD12_GL001369Not AvailableNegative558279 - 55943044543.9
Hypothetical proteinFD12_GL001370Not AvailableNegative559427 - 56011925792.0
Hypothetical proteinFD12_GL001371Not AvailableNegative560121 - 56070221723.5
hypothetical proteinFD12_GL001372Not AvailableNegative560718 - 5609157695.75
Putative lysinFD12_GL001373Not AvailableNegative561506 - 56262441658.4
hypothetical proteinFD12_GL001374Not AvailableNegative562630 - 56316318991.4
hypothetical proteinFD12_GL001375Not AvailableNegative563176 - 5634218414.07
Hypothetical proteinFD12_GL001376Not AvailableNegative563411 - 56375213640.0
hypothetical proteinFD12_GL001378Not AvailableNegative564402 - 56480013985.7
Putative reverse transcriptaseFD12_GL001379Not AvailableNegative564769 - 56581841405.6

Displaying genes 1 – 10 of 2658 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

155 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da

Displaying 1–10 of 155 metabolites

Health Effects

No health effects information available for this bacterium.