Eubacterium ramulus ATCC 29099

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Eubacteriaceae

Genus

Eubacterium

Description

Eubacterium ramulus ATCC 29099 is a Gram-positive anaerobic bacterium characterized by its ability to thrive in environments devoid of oxygen. As a member of the Eubacterium genus, this organism exhibits distinct structural and metabolic traits that facilitate its survival and proliferation in anaerobic conditions. The Gram-positive nature of E. ramulus indicates a thick peptidoglycan layer in its cell wall, which is a common feature among bacteria in this classification, potentially contributing to its resilience in specific ecological niches. Eubacterium ramulus is typically isolated from various anaerobic environments, including the human gastrointestinal tract, where it may play a role in the complex microbial ecosystem. The anaerobic requirement of this species suggests its adaptation to environments where oxygen is limited, which could influence its interactions with other microbial inhabitants and its overall contribution to metabolic processes, including fermentation. The understanding of E. ramulus and its traits is crucial for exploring its potential roles in health and disease, particularly in the context of gut microbiota. Given the importance of anaerobic bacteria in maintaining gut homeostasis and their involvement in metabolic pathways, Eubacterium ramulus may serve as an indicator of microbial diversity and stability within anaerobic habitats. Further studies on this organism could provide insights into its functional contributions to gut ecology and its potential implications for host health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyEubacteriaceae
GenusEubacterium
SpeciesEubacterium ramulus
StrainATCC 29099

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Eubacterium ramulus ATCC 29099


Gene Summary

Adenine Count

978594 bp

Thymine Count

993202 bp

Guanine Count

719034 bp

Cytosine Count

745906 bp

Genome Length

3436736 bp

Protein-coding Genes

3433 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail tape measure proteinHMPREF0373_00468Not Available-435437 - 438562111293.0
hypothetical proteinHMPREF0373_00469Not Available-438593 - 43889211754.9
Hypothetical proteinHMPREF0373_00470Not Available-438907 - 43937117008.2
Hypothetical proteinHMPREF0373_00471Not Available-439386 - 44004223435.6
hypothetical proteinHMPREF0373_00472Not Available-440027 - 44041014300.8
Activator of tail terminatorHMPREF0373_00473Not Available-440410 - 44081715115.8
Head-tail adapter proteinHMPREF0373_00474Not Available-440817 - 44114912200.5
Structural proteinHMPREF0373_00475Not Available-441164 - 44167019340.3
Putative major capsid/head proteinHMPREF0373_00476Not Available-441691 - 44269536416.3
Capsid and scaffold proteinHMPREF0373_00477Not Available-442708 - 44335524057.1

Displaying genes 1 – 10 of 3510 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

260 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000590phloretateC9H9O3Chemical structure of phloretateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 260 metabolites