Eubacterium ramulus ATCC 29099

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Eubacteriaceae

Genus

Eubacterium

Description

Eubacterium ramulus ATCC 29099 is a Gram-positive, anaerobic bacterium characterized by its ability to thrive in oxygen-deprived environments. This species possesses flagella, which may contribute to its motility in specific ecological niches. Eubacterium ramulus is classified with a single replicon, indicating a streamlined genomic organization that may facilitate its adaptation to anaerobic conditions. The organism is cataloged under the accession number AWVJ00000000.1, providing a reference for further genomic studies and potential applications in microbiology. Understanding the genetic makeup and functional capabilities of Eubacterium ramulus can offer insights into its ecological role, particularly in anaerobic environments where it may contribute to processes such as fermentation or organic matter decomposition. In summary, Eubacterium ramulus ATCC 29099 exemplifies the diversity of anaerobic bacteria, showcasing traits that enable it to occupy specific ecological niches. Its motility, coupled with its Gram-positive nature and genomic characteristics, suggests a potential role in anaerobic ecosystems, possibly influencing nutrient cycling and microbial community dynamics.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyEubacteriaceae
GenusEubacterium
SpeciesEubacterium ramulus
StrainATCC 29099

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Eubacterium ramulus ATCC 29099 E_ramulusHMPREF0373-1.0_Cont1842.2,

Gene Summary

Adenine Count

978594 bp

Thymine Count

993202 bp

Guanine Count

719034 bp

Cytosine Count

745906 bp

Genome Length

3436736 bp

Protein-coding Genes

3433 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
radical sam methylthiotransferase, miab/rimo familyHMPREF0373_00020Not AvailableNegative16666 - 1785945127.4
methyltransferase domain proteinHMPREF0373_00021Not AvailableNegative17991 - 1868326556.3
had hydrolase, family iibHMPREF0373_00022Not AvailableNegative18667 - 1948831293.8
aminotransferase, class i/iiHMPREF0373_00023Not AvailableNegative19469 - 2053040807.9
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive20736 - 20838Not Available
hypothetical proteinHMPREF0373_00024Not AvailableNegative20546 - 2162840217.6
hypothetical proteinHMPREF0373_00025Not AvailableNegative21638 - 2270541571.7
pyridoxal-dependent decarboxylase domain proteinHMPREF0373_00026Not AvailableNegative22719 - 2392746236.4
hypothetical proteinHMPREF0373_00027Not AvailableNegative24438 - 246056910.45
transcriptional regulator, arac familyHMPREF0373_00028Not AvailableNegative25249 - 2609432798.3

Displaying genes 71 – 80 of 3510 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

399 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000590phloretateC9H9O3Chemical structure of phloretateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 399 metabolites

Health Effects

No health effects information available for this bacterium.