Rhodococcus opacus M213

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus M213 is a gram-positive bacterium characterized by its filamentous cell arrangement and cocci shape. This organism is classified as an aerobe, indicating that it requires oxygen for its metabolic processes. R. opacus M213 is non-motile, lacking flagella, which suggests that it does not possess the ability to move independently. This bacterium thrives in mesophilic temperature ranges, making it well-suited for environments that are neither too hot nor too cold. R. opacus M213 has a single replicon and a single membrane, which is common in many bacterial species. It exists as a free-living organism, suggesting that it can survive and grow independently of other organisms in its environment. The genomic data for R. opacus M213 can be found under the accession AJYC00000000.2. This organism's traits highlight its ecological role, particularly in environments where it may contribute to the breakdown of organic materials. Given its ability to thrive in oxygen-rich conditions and its free-living nature, R. opacus M213 may play an important role in nutrient cycling and the degradation of various substrates in its ecosystem. Its filamentous structure may also provide advantages in colonizing specific habitats and interacting with other microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
StrainM213

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus M213
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus opacus M213


Gene Summary

Adenine Count

1513035 bp

Thymine Count

1522376 bp

Guanine Count

3082119 bp

Cytosine Count

3076635 bp

Genome Length

9194165 bp

Protein-coding Genes

8591 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
major facilitator superfamily multidrug resistance proteinWSS_A02075Not AvailableNegative482548 - 48371440088.9
gntr family transcriptional regulatorWSS_A02080Not AvailableNegative483748 - 48445525940.8
2-methylcitrate dehydrataseWSS_A02085Not AvailablePositive484683 - 48607148650.5
abc transporter atp-binding proteinWSS_A02090Q8U6M1Positive486115 - 48724540316.6
afub-like proteinWSS_A02095Not AvailablePositive487341 - 48901759287.3
iron abc transporter substrate-binding proteinWSS_A02100Not AvailablePositive489049 - 49019141282.7
acyl-coa dehydrogenaseWSS_A02105Q13PC1Positive490260 - 49140840873.8
3-hydroxyacyl-coa dehydrogenase nad-binding proteinWSS_A02110Q6NYL3Positive491426 - 49348973315.0
hypothetical proteinWSS_A02115Not AvailablePositive493682 - 4938947505.03
hypothetical proteinWSS_A02120Not AvailableNegative494268 - 49483121326.2

Displaying genes 461 – 470 of 8682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

618 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 618 metabolites

Health Effects

No health effects information available for this bacterium.