Rhodococcus opacus M213

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus M213 is a Gram-positive bacterium characterized by its cocci shape and filamentous cell arrangement. As an aerobic organism, R. opacus M213 requires the presence of oxygen for its metabolic processes. This strain has garnered interest within microbiological research due to its potential roles in bioremediation and biodegradation, particularly in environments contaminated with hydrocarbons. The filamentous arrangement of R. opacus M213 may enhance its ability to interact with various substrates, potentially increasing its efficiency in degrading complex organic compounds. This morphological trait is significant as it may facilitate nutrient acquisition and biofilm formation, allowing for more effective colonization of contaminated sites. In addition to its structural attributes, the aerobic nature of R. opacus M213 suggests that it could thrive in oxygen-rich environments, which is a common characteristic of many soil-dwelling bacteria. This trait may also imply an ability to utilize a diverse range of organic compounds as carbon sources, further supporting its role in nutrient cycling. The ecological implications of R. opacus M213 are noteworthy, as its filamentous growth and aerobic metabolism position it as a potential key player in the degradation of environmental pollutants. Understanding the capabilities of this strain could lead to advancements in bioremediation strategies, particularly in addressing the challenges posed by hydrocarbon pollution in terrestrial ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
StrainM213

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus M213
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus opacus M213


Gene Summary

Adenine Count

1513035 bp

Thymine Count

1522376 bp

Guanine Count

3082119 bp

Cytosine Count

3076635 bp

Genome Length

9194165 bp

Protein-coding Genes

8591 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinWSS_A08982Not Available-1929126 - 1933883166945.0
Tail assembly chaperoneWSS_A08987Not Available-1933873 - 193427415154.1
Tail assembly chaperoneWSS_A08992Not Available-1934255 - 193495026072.6
Major tail subunitWSS_A08997Not Available-1934954 - 193573326518.2
Minor capsid proteinWSS_A09002Not Available-1935745 - 193621517851.6
Head-to-tail connector proteinWSS_A09007Not Available-1936212 - 193653811983.2
Head-to-tail connector proteinWSS_A09012Not Available-1936547 - 193687611918.5
Head-to-tail adaptorWSS_A09017Not Available-1936867 - 193724113574.0
hypothetical proteinWSS_A09022Not Available-1937258 - 193769515343.7
Major capsid proteinWSS_A09027Not Available-1937671 - 193860032737.0

Displaying genes 11 – 20 of 8682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

618 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 618 metabolites