Shigella flexneri VA-6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri VA-6 is a Gram-negative, rod-shaped bacterium that exhibits a mesophilic temperature range, with an optimal growth temperature of 37°C. This organism is classified as a chemoorganotroph, deriving its energy from organic compounds. It typically exists in pairs or singles and has the capability for mobility, facilitated by the presence of flagella. S. flexneri VA-6 is a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This versatility allows it to adapt to various host-associated habitats, indicating its capacity to colonize and persist in different biological niches. Importantly, this strain does not undergo sporulation and possesses a single replicon, which is characteristic of many bacteria in its genus. In terms of its ecological role, S. flexneri VA-6 is classified as free-living, indicating its potential to exist independently outside of a host organism. This characteristic, combined with its ability to utilize organic material for energy, suggests that S. flexneri VA-6 may play a role in nutrient cycling within its environment, particularly in host-associated ecosystems. The strain is cataloged under the accession number AFGW00000000.1, contributing to the understanding of its genetic makeup and potential pathogenicity. The combination of its traits underscores the bacterium's adaptability and its significance in microbiological studies, particularly in relation to its interactions within host organisms and its survival strategies in varying ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
StrainVA-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri VA-6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri VA-6 gssVA6.contig.69, whole genome shotgun

Gene Summary

Adenine Count

1149492 bp

Thymine Count

1150111 bp

Guanine Count

1190737 bp

Cytosine Count

1188777 bp

Genome Length

4679117 bp

Protein-coding Genes

4808 genes

Non-Coding Genes

429 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein yhdhSFVA6_4176Not AvailablePositive3761600 - 376257434725.8
hypothetical proteinSFVA6_4177Not AvailableNegative3763249 - 37633895302.37
acetyl-coa carboxylase, biotin carboxyl carrier proteinSFVA6_4178Not AvailablePositive3763552 - 376402216688.2
acetyl-coa carboxylase, biotin carboxylaseSFVA6_4179Not AvailablePositive3764033 - 376538249337.7
hypothetical proteinSFVA6_4180Not AvailablePositive3765491 - 37657339083.17
sodium/pantothenate symporterSFVA6_4181Not AvailablePositive3765723 - 376717451720.3
ribosomal protein l11 methyltransferaseSFVA6_4182Not AvailablePositive3767186 - 376806731866.8
tim-barrel protein, nifr3 family proteinSFVA6_4183Not AvailablePositive3768516 - 376936131340.6
bacterial regulatory protein, fis family proteinSFVA6_4184Not AvailablePositive3769387 - 376968311240.6
hypothetical proteinSFVA6_4185Not AvailablePositive3769769 - 377065333446.4

Displaying genes 4301 – 4310 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.