Shigella flexneri VA-6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri VA-6 is a Gram-negative, rod-shaped bacterium that exhibits a mesophilic temperature range, with an optimal growth temperature of 37°C. This organism is classified as a chemoorganotroph, deriving its energy from organic compounds. It typically exists in pairs or singles and has the capability for mobility, facilitated by the presence of flagella. S. flexneri VA-6 is a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This versatility allows it to adapt to various host-associated habitats, indicating its capacity to colonize and persist in different biological niches. Importantly, this strain does not undergo sporulation and possesses a single replicon, which is characteristic of many bacteria in its genus. In terms of its ecological role, S. flexneri VA-6 is classified as free-living, indicating its potential to exist independently outside of a host organism. This characteristic, combined with its ability to utilize organic material for energy, suggests that S. flexneri VA-6 may play a role in nutrient cycling within its environment, particularly in host-associated ecosystems. The strain is cataloged under the accession number AFGW00000000.1, contributing to the understanding of its genetic makeup and potential pathogenicity. The combination of its traits underscores the bacterium's adaptability and its significance in microbiological studies, particularly in relation to its interactions within host organisms and its survival strategies in varying ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
StrainVA-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri VA-6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri VA-6 gssVA6.contig.69, whole genome shotgun

Gene Summary

Adenine Count

1149492 bp

Thymine Count

1150111 bp

Guanine Count

1190737 bp

Cytosine Count

1188777 bp

Genome Length

4679117 bp

Protein-coding Genes

4808 genes

Non-Coding Genes

429 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative fumarate hydratase subunit betaSFVA6_3946Not AvailablePositive3544194 - 354479922680.8
l-tartrate/succinate antiporterSFVA6_3947Not AvailablePositive3544847 - 354624450611.7
putative o-sialoglycoprotein endopeptidaseSFVA6_3948Not AvailableNegative3546287 - 354730036039.5
ribosomal protein s21SFVA6_3949Not AvailablePositive3547538 - 35477538500.42
dna primaseSFVA6_3950Not AvailablePositive3547864 - 354960965536.4
rna polymerase sigma factor rpodSFVA6_3951Not AvailablePositive3549804 - 355164570211.2
transposase dde domain proteinSFVA6_3952Not AvailablePositive3551783 - 355312951009.6
uracil dna glycosylase superfamily proteinSFVA6_3953Not AvailableNegative3553163 - 355363317411.9
Trna-metNot AvailableNot AvailablePositive3553794 - 3553869Not Available
siderophore-interacting domain proteinSFVA6_3955Not AvailableNegative3553923 - 35540786229.45

Displaying genes 4071 – 4080 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.