Shigella flexneri VA-6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri VA-6 is a Gram-negative, rod-shaped bacterium that exhibits a mesophilic temperature range, with an optimal growth temperature of 37°C. This organism is classified as a chemoorganotroph, deriving its energy from organic compounds. It typically exists in pairs or singles and has the capability for mobility, facilitated by the presence of flagella. S. flexneri VA-6 is a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This versatility allows it to adapt to various host-associated habitats, indicating its capacity to colonize and persist in different biological niches. Importantly, this strain does not undergo sporulation and possesses a single replicon, which is characteristic of many bacteria in its genus. In terms of its ecological role, S. flexneri VA-6 is classified as free-living, indicating its potential to exist independently outside of a host organism. This characteristic, combined with its ability to utilize organic material for energy, suggests that S. flexneri VA-6 may play a role in nutrient cycling within its environment, particularly in host-associated ecosystems. The strain is cataloged under the accession number AFGW00000000.1, contributing to the understanding of its genetic makeup and potential pathogenicity. The combination of its traits underscores the bacterium's adaptability and its significance in microbiological studies, particularly in relation to its interactions within host organisms and its survival strategies in varying ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
StrainVA-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri VA-6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri VA-6 gssVA6.contig.69, whole genome shotgun

Gene Summary

Adenine Count

1149492 bp

Thymine Count

1150111 bp

Guanine Count

1190737 bp

Cytosine Count

1188777 bp

Genome Length

4679117 bp

Protein-coding Genes

4808 genes

Non-Coding Genes

429 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
php domain proteinSFVA6_2086Not AvailablePositive1911327 - 191218731876.0
yrdc domain proteinSFVA6_2087Not AvailablePositive1912184 - 191280423213.2
ribosomal large subunit pseudouridine synthase bSFVA6_2088Not AvailablePositive1912905 - 191377732599.3
cob(i)yrinic acid a,c-diamide adenosyltransferaseSFVA6_2089Not AvailableNegative1913817 - 191440722042.2
short chain dehydrogenase family proteinSFVA6_2090Not AvailableNegative1914404 - 191516227962.6
peptidase family s49 family proteinSFVA6_2091Not AvailablePositive1915382 - 191643139338.6
protein ycinSFVA6_2092Not AvailableNegative1916467 - 19167189386.17
dna topoisomerase iSFVA6_2093Not AvailablePositive1917098 - 191970197599.2
hth-type transcriptional regulator cysbSFVA6_2094Not AvailablePositive1919904 - 192087836162.6
hypothetical proteinSFVA6_2095Not AvailablePositive1921197 - 19213375367.74

Displaying genes 2301 – 2310 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.