Shigella flexneri VA-6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella flexneri VA-6 is a Gram-negative, rod-shaped bacterium that exhibits a mesophilic temperature range, with an optimal growth temperature of 37°C. This organism is classified as a chemoorganotroph, deriving its energy from organic compounds. It typically exists in pairs or singles and has the capability for mobility, facilitated by the presence of flagella. S. flexneri VA-6 is a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This versatility allows it to adapt to various host-associated habitats, indicating its capacity to colonize and persist in different biological niches. Importantly, this strain does not undergo sporulation and possesses a single replicon, which is characteristic of many bacteria in its genus. In terms of its ecological role, S. flexneri VA-6 is classified as free-living, indicating its potential to exist independently outside of a host organism. This characteristic, combined with its ability to utilize organic material for energy, suggests that S. flexneri VA-6 may play a role in nutrient cycling within its environment, particularly in host-associated ecosystems. The strain is cataloged under the accession number AFGW00000000.1, contributing to the understanding of its genetic makeup and potential pathogenicity. The combination of its traits underscores the bacterium's adaptability and its significance in microbiological studies, particularly in relation to its interactions within host organisms and its survival strategies in varying ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri
StrainVA-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shigella flexneri VA-6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella flexneri VA-6 gssVA6.contig.69, whole genome shotgun

Gene Summary

Adenine Count

1149492 bp

Thymine Count

1150111 bp

Guanine Count

1190737 bp

Cytosine Count

1188777 bp

Genome Length

4679117 bp

Protein-coding Genes

4808 genes

Non-Coding Genes

429 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
muramoyltetrapeptide carboxypeptidaseSFVA6_1734Not AvailableNegative1596055 - 159696933546.4
endotype membrane-bound lytic murein transglycosylase aSFVA6_1735Not AvailablePositive1597069 - 159768022213.7
pilz domain proteinSFVA6_1736Not AvailableNegative1597682 - 159841627846.7
transglycosylase associated family proteinSFVA6_1737Not AvailablePositive1598617 - 15988718703.27
outer membrane insertion c-terminal signal domain proteinSFVA6_1738Not AvailableNegative1598921 - 160034253635.6
tonb-dependent receptor plug domain proteinSFVA6_1739Not AvailableNegative1600318 - 160087519889.2
quinolinate phosphoribosyl transferase, c-terminal domain proteinSFVA6_1740Not AvailableNegative1600901 - 160175530351.7
methyltransferase domain proteinSFVA6_1741Not AvailableNegative1601755 - 160256430723.2
abc transporter family proteinSFVA6_1742Not AvailableNegative1602574 - 160333227466.8
feccd transport family proteinSFVA6_1743Not AvailableNegative1603329 - 160428533935.9

Displaying genes 2011 – 2020 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.