Oscillochloris trichoides DG-6

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Chloroflexia

Order

Chloroflexales

Family

Oscillochloridaceae

Genus

Oscillochloris

Description

Oscillochloris trichoides DG-6 is characterized by a single replicon, which indicates a streamlined genomic organization that can be advantageous for specific ecological niches. This cyanobacterium, with the accession number ADVR00000000.1, is part of a group known for its photosynthetic capabilities. Cyanobacteria are crucial in various environments, contributing significantly to primary production and influencing nutrient cycling. The presence of a singular replicon may allow Oscillochloris trichoides DG-6 to efficiently regulate its genetic material, potentially enhancing its adaptability to fluctuating environmental conditions. This trait can be especially important in aquatic ecosystems, where cyanobacteria are often a primary food source for various organisms and play a key role in maintaining ecological balance. The ability of Oscillochloris trichoides DG-6 to thrive in its environment likely contributes to its ecological significance, as it can participate in processes such as nitrogen fixation and carbon sequestration. Understanding the genomic structure and traits of this species can provide insights into its ecological roles and potential applications in biotechnology, particularly in areas related to bioenergy and bioremediation.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassChloroflexia
OrderChloroflexales
FamilyOscillochloridaceae
GenusOscillochloris
SpeciesOscillochloris trichoides
StrainDG-6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oscillochloris trichoides DG-6


Gene Summary

Adenine Count

881622 bp

Thymine Count

875781 bp

Guanine Count

1278382 bp

Cytosine Count

1277975 bp

Genome Length

4313760 bp

Protein-coding Genes

3231 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive1 - 1418Not Available
lipopolysaccharide biosynthesis proteinOSCT_0001Not AvailablePositive32 - 46315167.5
23s ribosomal rnaNot AvailableNot AvailablePositive92 - 3030Not Available
atpase involved in chromosome partitioning-like proteinOSCT_0002Not AvailablePositive521 - 131528622.9
hypothetical proteinOSCT_0003Not AvailablePositive1817 - 316050720.1
5s ribosomal rnaNot AvailableNot AvailablePositive3137 - 3250Not Available
hypothetical proteinOSCT_0004Not AvailablePositive3197 - 397928486.2
polysaccharide biosynthesis proteinOSCT_0005Not AvailablePositive4001 - 546453673.8
hexapaptide repeat-containing transferaseOSCT_0006G3XD01Positive5545 - 613220707.9
oxidoreductase domain-containing proteinOSCT_0007P77376Positive6212 - 721937384.1

Displaying genes 1 – 10 of 3281 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

194 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 194 metabolites

Health Effects

No health effects information available for this bacterium.