[Clostridium] symbiosum WAL-14163

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Otoolea

Description

Clostridium symbiosum WAL-14163 is a Gram-negative bacterium characterized by having a single replicon. The strain is cataloged under the accession number ADLQ00000000.1, which serves as a reference for genomic information. While Clostridium species are generally known for their role in various ecological niches, specific details regarding the ecological role of C. symbiosum WAL-14163 are not provided. However, the fact that it is classified as Gram-negative suggests that it possesses a distinctive cell wall structure, which may influence its interactions within microbial communities. In general, members of the Clostridium genus are often involved in processes such as fermentation and can be important in nutrient cycling within their environments. They may also play a role in the gut microbiota of various hosts, contributing to digestive processes or influencing host health. Understanding the specific traits and genetic makeup of C. symbiosum WAL-14163 can provide insights into its potential functions and interactions in its ecological context.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusOtoolea
Species[Clostridium] symbiosum
StrainWAL-14163

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Clostridium] symbiosum WAL-14163 cont1.142, whole genome shotgun

Gene Summary

Adenine Count

1384672 bp

Thymine Count

1392189 bp

Guanine Count

1266535 bp

Cytosine Count

1268660 bp

Genome Length

5312064 bp

Protein-coding Genes

4474 genes

Non-Coding Genes

297 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHMPREF9474_01114Not AvailableNegative1354385 - 135689893210.9
cytidine/uridine-specific hydrolaseHMPREF9474_01115Not AvailableNegative1356947 - 135790634476.7
hypothetical proteinHMPREF9474_01116Not AvailableNegative1357930 - 135924949676.5
polysaccharide deacetylaseHMPREF9474_01117Not AvailableNegative1359354 - 136036736467.9
bltd proteinHMPREF9474_01118Not AvailableNegative1360555 - 136100717356.0
hypothetical proteinHMPREF9474_01119Not AvailableNegative1361042 - 136180328352.8
hypothetical proteinHMPREF9474_01120Not AvailableNegative1361832 - 136265930772.6
hypothetical proteinHMPREF9474_01121Not AvailableNegative1362836 - 136365430375.9
hypothetical proteinHMPREF9474_01122Not AvailableNegative1363671 - 136438126583.9
mate efflux family proteinHMPREF9474_01123Not AvailableNegative1364422 - 136583150057.6

Displaying genes 1421 – 1430 of 4771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

459 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da

Displaying 1–10 of 459 metabolites

Health Effects

No health effects information available for this bacterium.