[Clostridium] symbiosum ATCC 14940

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Otoolea

Description

Clostridium symbiosum ATCC 14940 is a Gram-negative bacterium that is part of the diverse Clostridia class. This species is characterized by having a single replicon, indicating a relatively straightforward genomic organization. The genome of C. symbiosum has been sequenced and is available under the accession number AWSU00000000.1. Clostridium symbiosum is significant in the context of microbial ecology and interactions within host organisms. Its Gram-negative nature suggests that it possesses an outer membrane, which can influence its interactions with the surrounding environment, including host tissues and other microbial species. This structural feature may play a role in its survival and functionality in various ecological niches, particularly in the gastrointestinal tract of mammals where Clostridia are commonly found. The presence of a single replicon may suggest a streamlined genetic organization, potentially facilitating efficient replication and adaptation to specific environments. Understanding the characteristics of C. symbiosum can provide insights into its role in microbial communities and its potential interactions with other organisms. This bacterium may contribute to the complex microbial ecology that supports digestion and nutrient absorption in its host, highlighting the importance of microbial symbionts in maintaining host health.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusOtoolea
Species[Clostridium] symbiosum
StrainATCC 14940

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Clostridium] symbiosum ATCC 14940


Gene Summary

Adenine Count

1266800 bp

Thymine Count

1252112 bp

Guanine Count

1158831 bp

Cytosine Count

1132932 bp

Genome Length

4810675 bp

Protein-coding Genes

4927 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Atp-dependent clp protease atp-binding subunitCLOSYM_00740Not AvailablePositive731922 - 73442093491.8
hypothetical proteinCLOSYM_00741Not AvailablePositive734486 - 73489915272.0
Putative replication protein repbCLOSYM_00742Not AvailablePositive735083 - 73636346391.7
Trna,type:trp,anti_codon:cca;Not AvailableNot AvailablePositive736512 - 736585Not Available
IntegraseCLOSYM_00744Not AvailableNegative736725 - 73806551525.3
Hypothetical proteinCLOSYM_00745Not AvailableNegative738126 - 73857816963.4
Hypothetical proteinCLOSYM_00746Not AvailableNegative738600 - 7388007590.7
Hypothetical proteinCLOSYM_00747Not AvailableNegative738813 - 73927717789.2
Helix-turn-helix domain-containing proteinCLOSYM_00748Not AvailableNegative739289 - 73980719874.7
Toxin-antitoxin system, antitoxin component, xre family proteinCLOSYM_00749Not AvailablePositive739886 - 74017610933.5

Displaying genes 1 – 10 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

494 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 494 metabolites

Health Effects

No health effects information available for this bacterium.