Oxalobacter paraformigenes strain HOxBLS

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Oxalobacter

Description

Oxalobacter paraformigenes strain HOxBLS is a Gram-negative bacterium recognized for its unique metabolic capabilities, particularly in the degradation of oxalate. This microorganism plays a significant role in the biogeochemical cycling of organic acids, contributing to the breakdown of oxalic acid, which is a common compound found in various plant materials. Characteristically, Gram-negative bacteria like O. paraformigenes possess a thin peptidoglycan layer surrounded by an outer membrane, which typically contains lipopolysaccharides. This structural feature is essential for the bacterium's interaction with its environment, influencing its resistance to certain antibiotics and its ability to interact with host organisms or other microbial communities. Strain HOxBLS has been studied for its potential applications in bioremediation and environmental microbiology, particularly in contexts where oxalate accumulation is problematic. By effectively utilizing oxalate as a carbon source, O. paraformigenes could contribute to reducing oxalate concentrations in various ecosystems, thus mitigating potential negative impacts associated with oxalate accumulation, such as mineral precipitation. The ecological significance of O. paraformigenes strain HOxBLS lies in its potential to facilitate nutrient recycling within its environment, which may enhance soil health and promote plant growth by converting oxalate into more accessible forms of carbon and energy for other microorganisms and plants. This trait underscores the importance of microbial communities in maintaining ecological balance and highlights the intricate interdependencies within soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusOxalobacter
SpeciesOxalobacter paraformigenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oxalobacter paraformigenes strain HOxBLS

Accession NumberACDP00000000.2

Gene Summary

Adenine Count

585996 bp

Thymine Count

590324 bp

Guanine Count

672953 bp

Cytosine Count

636413 bp

Genome Length

2485686 bp

Protein-coding Genes

2100 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Probable ss-1,3-n-acetylglucosaminyltransferaseOFAG_01055Not Available+1249300 - 125031338963.9
succinate-semialdehyde dehydrogenaseOFAG_01054Not Available-1250512 - 125197551989.1
hypothetical proteinOFAG_01053Not Available-1252208 - 125304429531.0
Tail fiber proteinOFAG_01052Not Available-1253056 - 125400333594.7
Tail fiber assembly-like proteinOFAG_01051Not Available-1254103 - 125476224175.4
Putative tail-collar fiber proteinOFAG_01050Not Available-1254772 - 125586939467.5
Tail fiber assembly-like proteinOFAG_01049Not Available-1255853 - 125651224503.7
Tail collar domain-containing proteinOFAG_01048Not Available-1256522 - 125752335192.7
CatOFAG_00880Not Available+1495853 - 149644622764.4
hypothetical proteinOFAG_00879Not Available-1496647 - 14968266305.66

Displaying genes 1 – 10 of 2311 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

164 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00013353-oxo-3-phenylpropanoateC9H7O3Chemical structure of 3-oxo-3-phenylpropanoateNot available
Average163.153Da
Monoisotopic163.0400677Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da

Displaying 1–10 of 164 metabolites