Oxalobacter paraformigenes strain HOxBLS

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Oxalobacter

Description

Oxalobacter paraformigenes strain HOxBLS is a Gram-negative bacterium characterized by its single replicon. This strain has been documented with the accession number ACDP00000000.2 in genomic databases. As a member of the genus Oxalobacter, this strain is part of a group of bacteria known for their ability to metabolize oxalate, a compound that can be toxic in high concentrations. The capacity to degrade oxalate is ecologically significant, particularly in the context of human health, as it may play a role in preventing the formation of kidney stones composed of calcium oxalate. The presence of a single replicon suggests a streamlined genome organization, which can be advantageous for rapid adaptation to environmental changes. This trait may facilitate efficient regulation of metabolic pathways involved in oxalate degradation, allowing for a more effective response to varying oxalate concentrations in the environment. Understanding the genetic and metabolic capabilities of Oxalobacter paraformigenes strain HOxBLS contributes to the broader knowledge of microbial roles in biogeochemical cycles, particularly in soil and gut ecosystems. The ability to metabolize oxalate not only highlights the ecological importance of this bacterium in nutrient cycling but also underscores its potential applications in bioremediation and health-related microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusOxalobacter
SpeciesOxalobacter paraformigenes
Strainstrain HOxBLS

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oxalobacter paraformigenes strain HOxBLS cont2.29, whole genome

Gene Summary

Adenine Count

585996 bp

Thymine Count

590324 bp

Guanine Count

672953 bp

Cytosine Count

636413 bp

Genome Length

2485686 bp

Protein-coding Genes

2100 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l6OFAG_01975Not AvailablePositive539180 - 53971319258.7
50s ribosomal protein l18OFAG_01976Not AvailablePositive539726 - 54008212766.5
30s ribosomal protein s5OFAG_01977Not AvailablePositive540093 - 54061118123.4
50s ribosomal protein l15OFAG_01979Not AvailablePositive540827 - 54125815059.6
preprotein translocase, secy subunitOFAG_01980Not AvailablePositive541285 - 54261948108.0
translation initiation factor if-1OFAG_01981Not AvailablePositive542644 - 5428628243.23
30s ribosomal protein s13OFAG_01982Not AvailablePositive543036 - 54340113612.8
30s ribosomal protein s11OFAG_01983Not AvailablePositive543447 - 54384814076.1
30s ribosomal protein s4OFAG_01984Not AvailablePositive543938 - 54456123717.7
dna-directed rna polymerase subunit alphaOFAG_01985Not AvailablePositive544628 - 54560535720.1

Displaying genes 741 – 750 of 2311 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

164 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00013353-oxo-3-phenylpropanoateC9H7O3Chemical structure of 3-oxo-3-phenylpropanoateNot available
Average163.153Da
Monoisotopic163.0400677Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da

Displaying 1–10 of 164 metabolites

Health Effects

No health effects information available for this bacterium.