Phocaeicola dorei 5_1_36/D4

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei 5_1_36/D4 is a Gram-negative, non-motile rod-shaped bacterium that thrives in multiple habitats and demonstrates a chemoheterotrophic mode of energy acquisition. This organism is classified as an anaerobe, indicating that it does not require oxygen for survival, which is characteristic of many bacteria that inhabit anaerobic environments. P. dorei 5_1_36/D4 has a temperature range classified as mesophilic, with an optimal growth temperature of 37°C. This suggests that it is well-adapted to environments that approximate the temperature of the human body, which may indicate a potential association with mammalian hosts or similar ecological niches. The bacterium is non-sporulating, which means it does not form spores as a survival strategy; instead, it relies on its adaptive capabilities in its preferred habitats. P. dorei 5_1_36/D4 possesses a single replicon, indicating a simpler genomic structure compared to some other bacteria that may have multiple replicons. The presence of flagella suggests that while the bacterium is non-motile, it may still have some capability for movement in specific contexts, potentially through other mechanisms or stages of its lifecycle. Understanding the ecological roles of P. dorei 5_1_36/D4 is critical, particularly in the context of its anaerobic lifestyle and habitat versatility. This may shed light on its interactions within microbial communities and its potential implications for human health, especially given its optimal growth conditions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
Strain5_1_36/D4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei 5_1_36/D4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei 5_1_36/D4


Gene Summary

Adenine Count

1590637 bp

Thymine Count

1633510 bp

Guanine Count

1190690 bp

Cytosine Count

1119911 bp

Genome Length

5534748 bp

Protein-coding Genes

4422 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive43 - 152Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive69 - 178Not Available
membrane protein, marc familyBSEG_04282Q59071Positive312 - 95623824.1
groes-like proteinBSEG_04281O35045Negative1037 - 205636745.9
l-fucose:h+ symporter permeaseBSEG_04280P11551Negative2080 - 333947155.0
amidohydrolase family proteinBSEG_04279Not AvailableNegative3366 - 429235509.2
oxidoreductase, aldo/keto reductase family proteinBSEG_04278O81884Negative4307 - 523934858.4
transcriptional regulator, arac familyBSEG_04277Not AvailableNegative5357 - 621733562.5
alpha-l-fucosidaseBSEG_04276P48300Positive6459 - 810562720.9
tonb-linked outer membrane protein, susc/raga familyBSEG_04275Not AvailablePositive8196 - 11267113468.0

Displaying genes 1 – 10 of 4501 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

385 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 385 metabolites

Health Effects

No health effects information available for this bacterium.