Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | 5_1_36/D4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1590637 bp
Thymine Count
1633510 bp
Guanine Count
1190690 bp
Cytosine Count
1119911 bp
Genome Length
5534748 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
79 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BSEG_04248 | Not Available | Negative | 45440 - 46138 | 26210.4 |
| polygalacturonase (pectinase) | BSEG_04247 | Not Available | Negative | 46116 - 47600 | 54876.1 |
| gdsl-like protein | BSEG_04246 | O31523 | Negative | 47618 - 48892 | 47830.4 |
| glycosyl hydrolase family 2, sugar binding domain protein | BSEG_04245 | T2KM09 | Negative | 48911 - 51778 | 110005.0 |
| f5/8 type c domain protein | BSEG_04244 | Not Available | Positive | 51990 - 54344 | 89249.8 |
| beta-galactosidase trimerization domain protein | BSEG_04243 | B9LW38 | Positive | 54323 - 56437 | 80942.2 |
| glycosyl hydrolase, family 88 | BSEG_04242 | T2KPL9 | Negative | 56556 - 57689 | 43937.2 |
| polygalacturonase (pectinase) | BSEG_04241 | Not Available | Negative | 57830 - 61117 | 123313.0 |
| fg-gap repeat protein | BSEG_04240 | Not Available | Negative | 61231 - 63084 | 69394.1 |
| hypothetical protein | BSEG_04239 | A0A0K2VM55 | Negative | 63100 - 64383 | 48792.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

