Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | 5_1_36/D4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1590637 bp
Thymine Count
1633510 bp
Guanine Count
1190690 bp
Cytosine Count
1119911 bp
Genome Length
5534748 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
79 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor, sigma-70 family | BSEG_03569 | Not Available | Negative | 1419932 - 1420534 | 23904.5 |
| glycosyl hydrolase, family 43 | BSEG_03568 | Not Available | Negative | 1420617 - 1422281 | 61608.0 |
| hypothetical protein | BSEG_03567 | Not Available | Negative | 1422295 - 1423509 | 45649.0 |
| polygalacturonase (pectinase) | BSEG_03566 | Not Available | Negative | 1423648 - 1425267 | 59156.8 |
| hypothetical protein | BSEG_03565 | Q89AM1 | Positive | 1425644 - 1426501 | 31326.5 |
| hypothetical protein | BSEG_03564 | Not Available | Positive | 1426509 - 1427510 | 38857.2 |
| tetrapyrrole methylase family protein | BSEG_03563 | Q9JXE3 | Positive | 1427531 - 1428238 | 26172.2 |
| hypothetical protein | BSEG_03562 | Not Available | Negative | 1428254 - 1429243 | 37679.9 |
| lipoyl synthase | BSEG_03561 | A6L1U8 | Negative | 1429301 - 1430155 | 31741.2 |
| peptidase, s9a/b/c family, catalytic domain protein | BSEG_03560 | A7UKV8 | Negative | 1430253 - 1432454 | 83411.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

