Desulfovibrio piger ATCC 29098

Spiral

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio piger ATCC 29098 is a Gram-negative, spiral-shaped bacterium known for its unique metabolic capabilities. This species possesses a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability in various environments. The presence of flagella suggests that D. piger is motile, which likely aids in its ability to navigate through its habitat, potentially enhancing its access to substrates necessary for its metabolic processes. Desulfovibrio piger is part of a group of bacteria that are known to reduce sulfate to sulfide during anaerobic respiration. This metabolic pathway is significant in various ecological contexts, particularly in sulfur cycling within anoxic environments such as sediments and the gastrointestinal tracts of animals. The ability to utilize sulfate also positions D. piger as an important player in the degradation of organic matter, contributing to nutrient cycling in these ecosystems. The accession number for the genomic data of D. piger is ABXU00000000.1, which allows for further studies and comparisons with other microbial species. Understanding the genetic and metabolic traits of Desulfovibrio piger can provide insights into its role in biogeochemical cycles and its potential applications in bioremediation processes, where sulfate reduction can be harnessed to mitigate environmental pollutants. Overall, the traits of D. piger underscore its ecological importance in anaerobic environments and its contribution to microbial diversity and function.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio piger
StrainATCC 29098

Profile

Physiology
Gram staining propertiesNegative
ShapeSpiral
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Desulfovibrio piger ATCC 29098
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio piger ATCC 29098


Gene Summary

Adenine Count

513893 bp

Thymine Count

530499 bp

Guanine Count

926972 bp

Cytosine Count

854874 bp

Genome Length

2826240 bp

Protein-coding Genes

3063 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Terminase large subunitDESPIG_00728Not AvailablePositive675278 - 67732677384.3
dna binding domain, excisionase familyDESPIG_00729Not AvailablePositive677329 - 6775387641.27
tat pathway signal sequence domain proteinDESPIG_00730Not AvailableNegative677655 - 6778768023.1
Hypothetical proteinDESPIG_00731Not AvailablePositive677949 - 6781708246.87
Portal proteinDESPIG_00732Not AvailablePositive678173 - 67976859749.5
Putative head maturation proteaseDESPIG_00733Not AvailablePositive679755 - 68096042870.9
hypothetical proteinDESPIG_00734Not AvailablePositive680970 - 68136814376.0
Major capsid proteinDESPIG_00735Not AvailablePositive681361 - 68236837126.3
Hypothetical proteinDESPIG_00736Not AvailablePositive682370 - 68297821913.8
hypothetical proteinDESPIG_00737Not AvailablePositive682992 - 68330611148.7

Displaying genes 1 – 10 of 3188 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

702 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 702 metabolites

Health Effects

No health effects information available for this bacterium.