Desulfovibrio piger ATCC 29098

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio piger ATCC 29098 is a Gram-negative bacterium characterized by its anaerobic metabolism and ability to reduce sulfate to sulfide. This species is part of the Desulfovibrio genus, which is known for its role in the sulfur cycle, particularly in anoxic environments. As a member of the sulfate-reducing bacteria (SRB), D. piger utilizes sulfate as a terminal electron acceptor, contributing to the biogeochemical processes in sediments and other anaerobic habitats. The Gram-negative nature of D. piger indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this bacterial group. This structural characteristic plays a role in its resilience in various environments, particularly those rich in organic matter and low in oxygen. The metabolic activities of D. piger are significant in bioremediation and the cycling of sulfur in ecosystems, where they help in the degradation of organic compounds and the transformation of sulfur species. Their ability to thrive in anaerobic conditions allows them to occupy ecological niches that are inhospitable to many other microorganisms. Overall, Desulfovibrio piger ATCC 29098 exemplifies the complex interactions within microbial communities, particularly in sedimentary environments, where it plays a crucial role in nutrient cycling and maintaining the balance of sulfur compounds. Understanding the metabolic pathways and ecological impacts of this organism can provide insights into microbial ecology and the functioning of anaerobic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio piger
StrainATCC 29098

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio piger ATCC 29098


Gene Summary

Adenine Count

513893 bp

Thymine Count

530499 bp

Guanine Count

926972 bp

Cytosine Count

854874 bp

Genome Length

2826240 bp

Protein-coding Genes

3063 genes

Non-Coding Genes

125 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Terminase large subunitDESPIG_00728Not Available+675278 - 67732677384.3
dna binding domain, excisionase familyDESPIG_00729Not Available+677329 - 6775387641.27
tat pathway signal sequence domain proteinDESPIG_00730Not Available-677655 - 6778768023.1
Hypothetical proteinDESPIG_00731Not Available+677949 - 6781708246.87
Portal proteinDESPIG_00732Not Available+678173 - 67976859749.5
Putative head maturation proteaseDESPIG_00733Not Available+679755 - 68096042870.9
hypothetical proteinDESPIG_00734Not Available+680970 - 68136814376.0
Major capsid proteinDESPIG_00735Not Available+681361 - 68236837126.3
Hypothetical proteinDESPIG_00736Not Available+682370 - 68297821913.8
hypothetical proteinDESPIG_00737Not Available+682992 - 68330611148.7

Displaying genes 1 – 10 of 3188 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

592 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 592 metabolites