Citrobacter youngae ATCC 29220

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter youngae ATCC 29220 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is motile due to the presence of flagella, which contributes to its ability to navigate its environment effectively. The strain is noted for having a single replicon, which is significant in understanding its genetic structure and replication mechanism. The genomic sequence of C. youngae ATCC 29220 is accessible under the accession number ABWL00000000.2, providing a resource for further genomic analysis and research. In terms of its ecological role, Citrobacter species, including C. youngae, are commonly found in various environments, including soil and water. They are known to participate in nutrient cycling and can be involved in the degradation of pollutants. This bacterium may also have implications in clinical settings, as members of the Citrobacter genus can be opportunistic pathogens. Understanding the traits of C. youngae ATCC 29220 can provide insights into both its ecological functions and potential impacts on human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter youngae
StrainATCC 29220

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter youngae ATCC 29220
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter youngae ATCC 29220 C_sp-1.0.1_Cont9.2, whole genome

Gene Summary

Adenine Count

1214351 bp

Thymine Count

1222268 bp

Guanine Count

1369428 bp

Cytosine Count

1344212 bp

Genome Length

5150259 bp

Protein-coding Genes

5278 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCIT292_10090P45795Negative4037780 - 40380379805.36
shikimate dehydrogenaseCIT292_10091A8AQH6Negative4038034 - 403885529411.1
putative sua5/ycio/yrdc/ywlc family proteinCIT292_10092Q57J68Negative4038857 - 403942920549.5
topoisomerase dna-binding c4 zinc finger domain proteinCIT292_10093P45771Negative4039434 - 403997620007.2
hypothetical proteinCIT292_10094B5F7R1Negative4040003 - 404046117888.3
dna protecting protein dpraCIT292_10095P30852Negative4040448 - 404157241286.6
peptide deformylaseCIT292_10096A8AQI1Positive4041702 - 404221119287.4
methionyl-trna formyltransferaseCIT292_10097Q32B62Positive4042226 - 404317334209.3
ribosomal rna small subunit methyltransferase bCIT292_10098B4SUR0Positive4043225 - 404451448344.3
potassium transporter peripheral membrane componentCIT292_10099P0AGJ0Positive4044536 - 404591250324.7

Displaying genes 4201 – 4210 of 5407 in total

Metabolites

959 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 959 metabolites

Health Effects

No health effects information available for this bacterium.