[Clostridium] scindens ATCC 35704

Rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Lachnoclostridium

Description

Clostridium scindens ATCC 35704 is a Gram-positive, rod-shaped bacterium that exhibits anaerobic growth, thriving in environments devoid of oxygen. This species is primarily found in the feces of its host, Homo sapiens, indicating its role in the human gut microbiome. C. scindens is characterized by its ability to form chains and singles, a trait observed in its cell arrangement. This bacterium is mesophilic, meaning it grows optimally at moderate temperatures, which aligns with the typical conditions found within the human body. Additionally, C. scindens possesses true flagella, which may facilitate its motility within the intestinal environment. The organism has a single replicon, suggesting a streamlined genomic structure that may contribute to its adaptability and efficiency in the gastrointestinal tract. Understanding the ecological role of C. scindens is important, as it may participate in various metabolic processes within the gut microbiota, potentially influencing human health. The presence of this bacterium in feces underscores its significance in the complex interactions of gut microorganisms, hinting at potential functions in digestion or the modulation of gut health. Further research could elucidate its specific roles and contributions to the overall microbial ecosystem in humans.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusLachnoclostridium
Species[Clostridium] scindens
StrainATCC 35704

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of [Clostridium] scindens ATCC 35704
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatfeces
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementChains, Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Clostridium] scindens ATCC 35704


Gene Summary

Adenine Count

970517 bp

Thymine Count

971450 bp

Guanine Count

839027 bp

Cytosine Count

838911 bp

Genome Length

3619905 bp

Protein-coding Genes

3872 genes

Non-Coding Genes

230 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive157210 - 157221Not Available
Putative integraseCLOSCI_00181Not AvailableNegative165511 - 16708260249.1
Trna-leu;Not AvailableNot AvailablePositive166608 - 166687Not Available
Site-specific recombinase for integration and excisionCLOSCI_00182Not AvailableNegative167069 - 16750016238.3
Site-specific recombinaseCLOSCI_00183Not AvailableNegative167497 - 16911961879.1
hypothetical proteinCLOSCI_00184Not AvailableNegative169120 - 1693388569.32
Trna-lys;Not AvailableNot AvailablePositive169128 - 169200Not Available
Trna-gln;Not AvailableNot AvailablePositive169210 - 169281Not Available
Trna-his;Not AvailableNot AvailablePositive169297 - 169370Not Available
Spor domain-containing proteinCLOSCI_00185Not AvailableNegative169485 - 17012022700.9

Displaying genes 1 – 10 of 4102 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

359 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 359 metabolites

Health Effects

No health effects information available for this bacterium.