Phocaeicola salanitronis DSM 18170

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola salanitronis DSM 18170 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species is notable for its genomic features, possessing four distinct replicons. The presence of multiple replicons can indicate a complex genomic architecture, which may contribute to its adaptability and resilience in various environments. The accession numbers for the genomic sequences of Phocaeicola salanitronis include NC_015166.1, NC_015164.1, NC_015165.1, and NC_015168.1, which provide a basis for further genomic analysis and comparative studies with related taxa. These sequences can be crucial for understanding its phylogenetic relationships and potential functional capabilities. The motility conferred by flagella may play a key role in the ecological niche of P. salanitronis. It may allow this bacterium to navigate through its environment effectively, accessing nutrients or evading unfavorable conditions. The genomic complexity suggested by the presence of four replicons may also enhance its survival strategies, potentially allowing it to thrive in fluctuating environments where other microorganisms might struggle. Further studies could elucidate the ecological roles and interactions of Phocaeicola salanitronis within its habitat, contributing to our understanding of microbial diversity and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola salanitronis
StrainDSM 18170

Profile

Physiology
Gram staining properties16865
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola salanitronis DSM 18170 plasmid pBACSA03, complete

Gene Summary

Adenine Count

1847 bp

Thymine Count

1898 bp

Guanine Count

1160 bp

Cytosine Count

1372 bp

Genome Length

6277 bp

Protein-coding Genes

8 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rida family proteinBACSA_RS00070Not AvailablePositive13912 - 1428913169.8
duf3805 domain-containing proteinBACSA_RS00075Not AvailablePositive14305 - 1515332503.2
abc-f family atp-binding cassette domain-containing proteinBACSA_RS00080Not AvailablePositive15252 - 1712372172.5
gggtgrt proteinBACSA_RS00085Not AvailableNegative17347 - 1835735947.1
iron-sulfur cluster assembly scaffold proteinBACSA_RS00090Not AvailableNegative18374 - 1907525335.6
dmp19 family proteinBACSA_RS00095Not AvailablePositive19453 - 1997720315.8
hypothetical proteinBACSA_RS00100Not AvailablePositive20295 - 2114931883.8
yip1 family proteinBACSA_RS00105Not AvailablePositive21285 - 2185421248.6
ssra-binding proteinBACSA_RS00110Not AvailablePositive21857 - 2231517788.7
methionine synthaseBACSA_RS00115Not AvailablePositive22436 - 25186100909.0

Displaying genes 21 – 30 of 3775 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

315 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 315 metabolites

Health Effects

No health effects information available for this bacterium.