Rhodococcus oryzae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus oryzae is a noteworthy bacterium characterized by the presence of flagella, which facilitates its motility. This trait contributes to its ability to adapt to various environments, allowing it to thrive in diverse ecological niches. The organism has a single replicon, indicative of its genomic structure, which can have implications for its replication and genetic stability. The accessions associated with Rhodococcus oryzae include SUMD00000000.1, which may provide essential genomic data for researchers studying its characteristics and behaviors. Such genomic insights can help elucidate the metabolic pathways and ecological roles of this bacterium. In ecological contexts, the motility conferred by flagella may enhance Rhodococcus oryzae's ability to colonize different substrates and interact with other microorganisms. This adaptability could be significant in various environments, particularly in soil and aquatic ecosystems, where it may play a role in biogeochemical cycles. Understanding the traits of Rhodococcus oryzae can contribute to broader knowledge of microbial ecology and the functional roles of bacteria within their habitats.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus oryzae strain NEAU-CX67 Scaffold31, whole genome

Gene Summary

Adenine Count

831339 bp

Thymine Count

822922 bp

Guanine Count

1847503 bp

Cytosine Count

1864077 bp

Genome Length

5365841 bp

Protein-coding Genes

4823 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class i sam-dependent methyltransferaseFCG67_21245Not AvailablePositive4559305 - 456019832164.6
spfh domain-containing proteinFCG67_21250Not AvailableNegative4560376 - 456122129866.1
amino acid abc transporter atp-binding proteinFCG67_21255Not AvailableNegative4561269 - 456203027908.3
amino acid abc transporter permeaseFCG67_21260Not AvailableNegative4562027 - 456301635829.9
abc transporter substrate-binding proteinFCG67_21265Not AvailableNegative4563037 - 456390930466.9
isocitrate/isopropylmalate dehydrogenase family proteinFCG67_21270Not AvailableNegative4564068 - 456521039939.4
2'-5' rna ligase family proteinFCG67_21275Not AvailablePositive4565209 - 456572118729.7
thioredoxinFCG67_21280Not AvailablePositive4565816 - 456617812965.3
glcnac-pi de-n-acetylaseFCG67_21285Not AvailableNegative4566195 - 456696827461.1
protein phosphataseFCG67_21290Not AvailablePositive4567029 - 456746316279.3

Displaying genes 4171 – 4180 of 4881 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.