Rhodococcus oryzae

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus oryzae is a noteworthy bacterium characterized by the presence of flagella, which facilitates its motility. This trait contributes to its ability to adapt to various environments, allowing it to thrive in diverse ecological niches. The organism has a single replicon, indicative of its genomic structure, which can have implications for its replication and genetic stability. The accessions associated with Rhodococcus oryzae include SUMD00000000.1, which may provide essential genomic data for researchers studying its characteristics and behaviors. Such genomic insights can help elucidate the metabolic pathways and ecological roles of this bacterium. In ecological contexts, the motility conferred by flagella may enhance Rhodococcus oryzae's ability to colonize different substrates and interact with other microorganisms. This adaptability could be significant in various environments, particularly in soil and aquatic ecosystems, where it may play a role in biogeochemical cycles. Understanding the traits of Rhodococcus oryzae can contribute to broader knowledge of microbial ecology and the functional roles of bacteria within their habitats.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus oryzae strain NEAU-CX67 Scaffold31, whole genome

Gene Summary

Adenine Count

831339 bp

Thymine Count

822922 bp

Guanine Count

1847503 bp

Cytosine Count

1864077 bp

Genome Length

5365841 bp

Protein-coding Genes

4823 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospho-n-acetylmuramoyl-pentapeptide- transferaseFCG67_11675Not AvailableNegative2539162 - 254024137937.8
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseFCG67_11680Not AvailableNegative2540238 - 254178552582.5
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseFCG67_11685Not AvailableNegative2541782 - 254344656940.1
penicillin-binding protein 2FCG67_11690Not AvailableNegative2543591 - 254534861763.7
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhFCG67_11700Not AvailableNegative2546196 - 254721236362.4
division/cell wall cluster transcriptional repressor mrazFCG67_11705Not AvailableNegative2547382 - 254781315801.5
duf3040 domain-containing proteinFCG67_11710Not AvailableNegative2548257 - 254868515152.5
hypothetical proteinFCG67_11715Not AvailableNegative2548852 - 254923513441.6
gnat family n-acetyltransferaseFCG67_11720Not AvailablePositive2549513 - 255016324402.7
nad(p)/fad-dependent oxidoreductaseFCG67_11725Not AvailablePositive2550173 - 255175055446.0

Displaying genes 2301 – 2310 of 4881 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.