Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase | FBD94_04555 | Not Available | Positive | 1170967 - 1171788 | 30784.7 |
| gfo/idh/moca family oxidoreductase | FBD94_04560 | Not Available | Positive | 1171841 - 1173271 | 52964.2 |
| phosphoheptose isomerase | FBD94_04565 | Not Available | Positive | 1173324 - 1173821 | 19058.4 |
| hypothetical protein | FBD94_04570 | Not Available | Negative | 1174137 - 1174466 | 12733.3 |
| hypothetical protein | FBD94_04575 | Not Available | Negative | 1174707 - 1174760 | 1877.29 |
| helix-turn-helix transcriptional regulator | FBD94_04580 | Not Available | Negative | 1174828 - 1175355 | 20433.6 |
| n-acetyltransferase | FBD94_04585 | Not Available | Negative | 1175352 - 1175813 | 17841.9 |
| tetratricopeptide repeat protein | FBD94_04595 | Not Available | Positive | 1177162 - 1178493 | 50666.5 |
| tonb-dependent receptor | FBD94_04600 | Not Available | Positive | 1178703 - 1181849 | 113833.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_04605 | Not Available | Positive | 1181869 - 1183686 | 66950.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

