Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fucose:h+ symporter permease | FBD94_04505 | Not Available | Positive | 1150692 - 1151927 | 44840.5 |
| glycoside hydrolase family 2 | FBD94_04510 | Not Available | Positive | 1152005 - 1155595 | 135382.0 |
| hypothetical protein | FBD94_04515 | Not Available | Negative | 1156016 - 1157476 | 52686.9 |
| hypothetical protein | FBD94_04520 | Not Available | Negative | 1157500 - 1158771 | 47861.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | FBD94_04525 | Not Available | Negative | 1158811 - 1160823 | 76400.2 |
| susc/raga family tonb-linked outer membrane protein | FBD94_04530 | Not Available | Negative | 1160835 - 1164143 | 121819.0 |
| mfs transporter | FBD94_04535 | Not Available | Negative | 1164668 - 1165954 | 46330.8 |
| thua domain-containing protein | FBD94_04540 | Not Available | Negative | 1165976 - 1166716 | 27834.0 |
| tonb-dependent receptor | FBD94_04545 | Not Available | Positive | 1166923 - 1169280 | 86629.3 |
| duf5010 domain-containing protein | FBD94_04550 | Not Available | Positive | 1169395 - 1170939 | 56866.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

